Mechanistic and stereochemical aspects of the reaction of boranephosphonate diesters with amines promoted by iodine were investigated. This is a complex, multistep reaction that ultimately produces the corresponding phosphoramidate diesters via a formal replacement of the borane group by an amine moiety. We found by a stereochemical correlation analysis that, contrary to a literature report, the whole transformation proceeded with total inversion of the configuration at the phosphorus center. Our study also showed that instead of the postulated nucleophilic substitution by iodide at the phosphorus center of the initially formed intermediate, the corresponding iodoboranephosphonate, the crucial step of the reaction involved intermediacy of H-phosphonate derivatives that reacted with iodine to afford ultimately phosphoramidate diesters. The reaction of the iodoboranephosphonate with the amine to produce an aminoboranephosphonate diester that rapidly dissociated into the corresponding H-phosphonate and the borane parts was apparently instrumental to the formation of an H-phosphonate diester intermediate.
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http://dx.doi.org/10.1021/acs.joc.8b00419 | DOI Listing |
J Org Chem
March 2020
Institute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 12/14, 61-704 Poznań, Poland.
Boranephosphonate diesters react with heteroaromatic and certain tertiary amines in the presence of an oxidant (I) to afford the boron-modified phosphodiester analogues containing a P-B-N structural motif. Our multinuclear P and B NMR spectroscopy studies lend support for a two-step mechanism involving generation of a λ-boranephosphonate intermediate that immediately coordinates an amine in the solvent cage, leading to -pyridinium or -ammonium boranephosphonate betaine derivatives. We found that the type of the solvent used (e.
View Article and Find Full Text PDFJ Org Chem
May 2018
Institute of Bioorganic Chemistry, Polish Academy of Sciences , Noskowskiego 12/14 , 61-704 Poznań , Poland.
Mechanistic and stereochemical aspects of the reaction of boranephosphonate diesters with amines promoted by iodine were investigated. This is a complex, multistep reaction that ultimately produces the corresponding phosphoramidate diesters via a formal replacement of the borane group by an amine moiety. We found by a stereochemical correlation analysis that, contrary to a literature report, the whole transformation proceeded with total inversion of the configuration at the phosphorus center.
View Article and Find Full Text PDFJ Am Chem Soc
March 2015
Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80303, United States.
The introduction of modifications into oligonucleotides is important for a large number of applications in the nucleic acids field. However, the method of solid-phase DNA synthesis presents significant challenges for incorporating many useful modifications that are unstable to the conditions for preparing synthetic DNA. Here we report that boranephosphonate diesters undergo facile nucleophilic substitution in a stereospecific manner upon activation by iodine.
View Article and Find Full Text PDFOrg Biomol Chem
December 2012
Department of Chemistry and Biochemistry, University of Colorado, 3415 Colorado Ave., JSC Biotech Bldg. 530, UCB 596, Boulder, CO 80309, USA.
Oligodeoxyribonucleotides bearing boranephosphonate linkages (bpDNA) were shown to reduce a number of metal ions and form nanoparticles through a novel reaction pathway that leads to phosphate diesters or phosphate triesters in water or alcohols respectively. The synthetic utility of this reaction was further demonstrated through the synthesis of oligodeoxyribonucleotides containing phosphate triester linkages. This new reactivity also makes bpDNA promising for use in construction of DNA templated metallic nanostructures.
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