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Dynamic Outlier Slicing Allows Broader Exploration of Adaptive Divergence: A Comparison of Individual Genome and Pool-Seq Data Linked to Humic Adaptation in Perch.
Mol Ecol
January 2025
Institute of Freshwater Research, Department of Aquatic Resources (SLU Aqua), Swedish University of Agricultural Sciences, Drottningholm, Sweden.
How genetic variation contributes to adaptation at different environments is a central focus in evolutionary biology. However, most free-living species still lack a comprehensive understanding of the primary molecular mechanisms of adaptation. Here, we characterised the targets of selection associated with drastically different aquatic environments-humic and clear water-in the common freshwater fish, Eurasian perch (Perca fluviatilis).
View Article and Find Full Text PDFCross-species single-cell transcriptomics reveals neuronal similarities and heterogeneity in amniote pallium.
Zool Res
January 2025
BGI Research, Hangzhou, Zhejiang 310030, China.
The amniote pallium, a vital component of the forebrain, exhibits considerable evolutionary divergence across species and mediates diverse functions, including sensory processing, memory formation, and learning. However, the relationships among pallial subregions in different species remain poorly characterized, particularly regarding the identification of homologous neurons and their transcriptional signatures. In this study, we utilized single-nucleus RNA sequencing to examine over 130 000 nuclei from the macaque ( ) neocortex, complemented by datasets from humans ( ), mice ( ), zebra finches ( ), turtles ( ), and lizards ( s), enabling comprehensive cross-species comparison.
View Article and Find Full Text PDFIdentification of novel rodent and shrew orthohepeviruses sheds light on hepatitis E virus evolution.
Zool Res
January 2025
Institute of Preventive Medicine, School of Public Health, Dali University, Yunnan Key Laboratory of Screening and Research on Anti-pathogenic Plant Resources from Western Yunnan, Yunnan Key Laboratory of Zoonotic Disease Cross-border Prevention and Quarantine, Dali, Yunnan 671000, China. E-mail:
The family has seen an explosive expansion in its host range in recent years, yet the evolutionary trajectory of this zoonotic pathogen remains largely unknown. The emergence of rat hepatitis E virus (HEV) has introduced a new public health threat due to its potential for zoonotic transmission. This study investigated 2 464 wild small mammals spanning four animal orders, eight families, 21 genera, and 37 species in Yunnan Province, China.
View Article and Find Full Text PDFLocal Adaptive Fusion Regression (LAFR) for Local Linear Multivariate Calibration: Application to Large Datasets.
Appl Spectrosc
January 2025
Department of Chemistry, Idaho State University, Pocatello, Idaho, USA.
Impeding linear calibration models from accurately predicting target sample analyte amounts are the target sample-wise deviations in measurement profiles (e.g., spectra) relative to calibration samples.
View Article and Find Full Text PDFDoes urban-rural integration contribute to environmental health? Exploring the interplay between urban-rural integration and air quality dynamics in Yangtze River middle reaches city cluster.
Front Public Health
January 2025
School of Business Administration, Zhongnan University of Economics and Law, Wuhan, China.
Background: Exploring the coordinated relationship between urban-rural integration and air quality has significant implications for promoting urban-rural development, preventing air pollution and ensuring residents' health. This study takes Yangtze River middle reaches city cluster as a case study, calculates the levels of urban-rural integration and air quality development, analyzes their coupled coordination relationship and driving factors, and explores the path of coordinated development.
Methods: This study constructs a coupling coordination degree model to analyze the relationship between the urban-rural integration development level and air quality development level.
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