We report an implementation of extended symmetry-adapted perturbation theory (XSAPT) in the atomic orbital basis, extending this method to systems where the monomers are large. In our "XSAPT(KS)" approach, monomers are described using range-separated Kohn-Sham (KS) density functional theory (DFT), with correct asymptotic behavior set by tuning the range-separation parameter ω in a monomer-specific way. This is accomplished either by conventional ionization potential (IP)-based tuning, in which ω is adjusted to satisfy the condition ε(ω) = -IP(ω), or else using a "global density-dependent" (GDD) condition, in which ω is fixed based on the size of the exchange hole. The latter procedure affords better results for both total interaction energies and energy components, when used in conjunction with our third-generation pairwise atom-atom dispersion potential (+ aiD3). Three-body (triatomic) dispersion terms are found to be important when the monomers are large, and we incorporate these by means of an Axilrod-Teller-Muto term, E, which reduces errors in supramolecular interaction energies by about a factor of 2. The XSAPT(KS) + aiD3 + E(ω) approach affords mean absolute errors as low as 1.2 and 4.2 kcal/mol, respectively, for the L7 and S12L benchmark test sets of large dimers. Such errors are comparable to those afforded by far more expensive methods, such as DFT-SAPT, and the closely related second-order perturbation theory with coupled dispersion (MP2C). We also survey the performance of various other quantum-chemical methods for these data sets and identify several semiempirical and DFT-based approaches whose accuracy approaches that of MP2C, at dramatically reduced cost.
Download full-text PDF |
Source |
---|---|
http://dx.doi.org/10.1021/acs.jctc.8b00058 | DOI Listing |
J Chem Theory Comput
January 2025
Thermodynamics Research Center, National Institute of Standards and Technology, Boulder, Colorado 80305-3337, United States.
Our recently developed approach based on the local coupled-cluster with single, double, and perturbative triple excitation [LCCSD(T)] model gives very efficient means to compute the ideal-gas enthalpies of formation. The expanded uncertainty (95% confidence) of the method is about 3 kJ·mol for medium-sized compounds, comparable to typical experimental measurements. Larger compounds of interest often exhibit many conformations that can significantly differ in intramolecular interactions.
View Article and Find Full Text PDFJ Chem Phys
January 2025
Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo, P.O. Box 1033 Blindern, N-0315 Oslo, Norway.
Traditionally, excitation energies in coupled-cluster (CC) theory have been calculated by solving the CC Jacobian eigenvalue equation. However, based on our recent work [Jørgensen et al., Sci.
View Article and Find Full Text PDFChem Sci
December 2024
VASP Software GmbH Berggasse 21 A-1090 Vienna Austria.
Constructing a self-consistent first-principles framework that accurately predicts the properties of electron transfer reactions through finite-temperature molecular dynamics simulations is a dream of theoretical electrochemists and physical chemists. Yet, predicting even the absolute standard hydrogen electrode potential, the most fundamental reference for electrode potentials, proves to be extremely challenging. Here, we show that a hybrid functional incorporating 25% exact exchange enables quantitative predictions when statistically accurate phase-space sampling is achieved thermodynamic integrations and thermodynamic perturbation theory calculations, utilizing machine-learned force fields and Δ-machine learning models.
View Article and Find Full Text PDFJ Leukoc Biol
January 2025
Department of Biochemistry and Microbiology, Faculty of Science, University of Victoria, Victoria BC, Canada.
The thymus is a primary lymphoid organ where major types of T lymphocytes undergo essential developmental processes. Eosinophils are among the cell types present in microenvironments within the thymus, and perhaps surprisingly, the role of thymic eosinophils, especially during homeostatic conditions, remains unclear. Major physiological events impact thymic organization and function throughout life: including age-related involution, pregnancy, and exposure to chemotherapy or radiation.
View Article and Find Full Text PDFPLoS One
January 2025
IT4Innovations, VSB - Technical University of Ostrava, Ostrava, Czech Republic.
Malware is a common word in modern era. Everyone using computer is aware of it. Some users have to face the problem known as Cyber crimes.
View Article and Find Full Text PDFEnter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!