Calculating curly arrows from ab initio wavefunctions.

Nat Commun

ARC Centre of Excellence in Exciton Science, School of Chemistry, UNSW Sydney, Sydney, NSW, 2052, Australia.

Published: April 2018

Despite being at the heart of chemical thought, the curly arrow notation of reaction mechanisms has been treated with suspicion-the connection with rigorous molecular quantum mechanics being unclear. The connection requires a view of the wavefunction that goes beyond molecular orbitals and rests on the most fundamental property of electrons. The antisymmetry of electronic wavefunctions requires that an N-electron wavefunction repeat itself in 3N dimensions, thus exhibiting tiles. Inspection of wavefunction tiles permits insight into structure and mechanism. Here, we demonstrate that analysis of the wavefunction tile along a reaction coordinate reveals the electron movements depicted by the curly arrow notation for several reactions. The Diels-Alder reaction is revealed to involve the separation and counter propagation of electron spins. This unprecedented method of extracting the movements of electrons during a chemical reaction is a breakthrough in connecting traditional depictions of chemical mechanism with state-of-the-art quantum chemical calculations.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5897577PMC
http://dx.doi.org/10.1038/s41467-018-03860-2DOI Listing

Publication Analysis

Top Keywords

curly arrow
8
arrow notation
8
calculating curly
4
curly arrows
4
arrows initio
4
initio wavefunctions
4
wavefunctions despite
4
despite heart
4
chemical
4
heart chemical
4

Similar Publications

An array of thiophene-based π-conjugated linkers in covalently linked pentacene dimers allow us to access diverse quantum interference (QI), modulating nonadiabatic coupling (NAC) in the singlet fission (SF) process. Simulations show that structural isomerism in terms of S atom orientation substantially alters NAC with relatively marginal impacts on energies. Extended curly arrow rules (ECARs) reveal sensitive dependence of QI on SF linker topologies and connectivity, categorizing regimes of constructive, destructive, and previously unrealized in SF research, shifted destructive QI.

View Article and Find Full Text PDF

The Hitchhiker's Guide to the Wave Function∥.

J Phys Chem A

February 2022

ARC Centre of Excellence in Exciton Science, School of Chemistry, UNSW, Sydney, New South Wales 2052, Australia.

The electronic wave function of molecules is 3-dimensional and inseparable in the coordinates of the electrons. Whereas molecular orbitals are often invoked to visualize the electronic structure, they are nonunique, with the same 3-dimensional wave function being represented by an infinite number of 3-D, one-electron functions (orbitals). Furthermore, multireference wave functions cannot be described by an antisymmetrized product of a single set of occupied orbitals.

View Article and Find Full Text PDF

Controlling charge transport through molecular wires by utilizing quantum interference (QI) is a growing topic in single-molecular electronics. In this article, scanning tunneling microscopy-break junction techniques and density functional theory calculations are employed to investigate the single-molecule conductance properties of four molecules that have been specifically designed to test extended curly arrow rules (ECARs) for predicting QI in molecular junctions. Specifically, for two new isomeric 1-phenylpyrrole derivatives, the conductance pathway between the gold electrodes must pass through a nitrogen atom: this novel feature is designed to maximize the influence of the heteroatom on conductance properties and has not been the subject of prior investigations of QI.

View Article and Find Full Text PDF

The ability to easily and reliably predict quantum interference (QI) behaviour would facilitate the design of functional molecular wires with potential applications in switches, transistors and thermoelectric devices. A variety of predictive methods exist, but with the exception of computationally-expensive DFT-based charge transport simulations, these often fail to account for the experimentally observed behaviour of molecules that differ significantly in structure from alternant polycyclic aromatic hydrocarbons. By considering a range of prior studies we have developed an extension to predictive "curly arrow rules".

View Article and Find Full Text PDF

This study is focused on describing the molecular mechanism beyond the molecular picture provided by the evolution of molecular orbitals, valence bond structures along the reaction progress, or conceptual density functional theory. Using bonding evolution theory (BET) analysis, we have deciphered the mechanism of the 1,3-dipolar rearrangement between acetonitrile oxide and (1,2,4)-2-cyano-7-oxabicyclo[2.2.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!