3-Aminotyrosine (NHY) has been a useful probe to study the role of redox active tyrosines in enzymes. This report describes properties of NHY of key importance for its application in mechanistic studies. By combining the tRNA/NHY-RS suppression technology with a model protein tailored for amino acid redox studies (αX, X = NHY), the formal reduction potential of NHY(O/OH) ( E°' = 395 ± 7 mV at pH 7.08 ± 0.05) could be determined using protein film voltammetry. We find that the Δ E°' between NHY(O/OH) and Y(O/OH) when measured under reversible conditions is ∼300-400 mV larger than earlier estimates based on irreversible voltammograms obtained on aqueous NHY and Y. We have also generated D-NHY-α2 of ribonucleotide reductase (RNR), which when incubated with β2/CDP/ATP generates the D-NHY-α2/β2 complex. By multifrequency electron paramagnetic resonance (35, 94, and 263 GHz) and 34 GHz H ENDOR spectroscopies, we determined the hyperfine coupling (hfc) constants of the amino protons that establish RNH planarity and thus minimal perturbation of the reduction potential by the protein environment. The amount of Y in the isolated NHY-RNR incorporated by infidelity of the tRNA/NHY-RS pair was determined by a generally useful LC-MS method. This information is essential to the utility of this NHY probe to study any protein of interest and is employed to address our previously reported activity associated with NHY-substituted RNRs.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6110390PMC
http://dx.doi.org/10.1021/acs.biochem.8b00160DOI Listing

Publication Analysis

Top Keywords

ribonucleotide reductase
8
nhy probe
8
probe study
8
reduction potential
8
nhy
5
properties site-specifically
4
site-specifically incorporated
4
incorporated 3-aminotyrosine
4
3-aminotyrosine proteins
4
proteins study
4

Similar Publications

Targeting iron metabolism has emerged as a novel therapeutic strategy for the treatment of cancer. As such, iron chelator drugs are repurposed or specifically designed as anticancer agents. Two important chelators, deferasirox (Def) and triapine (Trp), attack the intracellular supply of iron (Fe) and inhibit Fe-dependent pathways responsible for cellular proliferation and metastasis.

View Article and Find Full Text PDF

In Saccharomyces cerevisiae cells, the bulk of mitochondrial DNA (mtDNA) replication is mediated by the replicative high-fidelity DNA polymerase γ. However, upon UV irradiation low-fidelity translesion polymerases: Polη, Polζ and Rev1, participate in an error-free replicative bypass of UV-induced lesions in mtDNA. We analysed how translesion polymerases could function in mitochondria.

View Article and Find Full Text PDF

Disruption of deoxyribonucleotide triphosphate biosynthesis leads to RAS proto-oncogene activation and perturbation of mitochondrial metabolism.

J Biol Chem

December 2024

Virus and Cellular Stress Unit, Department of Virology, Université Paris Cité, Institut Pasteur, 28 rue du Dr. Roux, F-75724 Paris cedex 15, France. Electronic address:

Perturbation of the deoxyribonucleotide triphosphate (dNTP) pool is recognized for contributing to the mutagenic processes involved in oncogenesis. The RAS gene family encodes well characterized oncoproteins whose structure and function are among the most frequently altered in several cancers. In this work, we show that fluctuation of the dNTP pool induces CG->TA mutations across the whole genome, including RAS gene at codons for glycine 12 and 13, known hotspots in cancers.

View Article and Find Full Text PDF

RRM1 promotes homologous recombination and radio/chemo-sensitivity via enhancing USP11 and E2F1-mediated RAD51AP1 transcription.

Cell Death Discov

December 2024

High Magnetic Field Laboratory, Key Laboratory of High Magnetic Field and Ion Beam Physical Biology, Chinese Academy of Sciences; Anhui Province Key Laboratory of Environmental Toxicology and Pollution Control Technology, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei, Anhui, China.

Ribonucleotide reductase M1 (RRM1), the catalytic subunit of ribonucleotide reductase, plays a pivotal role in converting ribonucleotides (NTP) into deoxyribonucleotides (dNTP), essential for DNA replication and repair. Elevated RRM1 expression is associated with various human cancers, correlating with poorer prognosis and reduced overall survival rates. Our previous study found that RRM1 will enter the nucleus to promote DNA damage repair.

View Article and Find Full Text PDF

Tyrosine kinase inhibitors (TKIs), such as sunitinib, have emerged as promising agents in renal cell carcinoma (RCC) treatment, particularly in patients at advanced/metastatic clinical stages. However, acquired resistance to sunitinib is common following prolonged clinical treatment in RCC. Increasing evidence has demonstrated a strong correlation between inhibitor of nuclear factor kappa B kinase subunit epsilon (IKBKE) and cancer progression as well as drug resistance.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!