Under anaerobic conditions, is able to metabolize molecular hydrogen via the action of several [NiFe]-hydrogenase enzymes. Hydrogenase-2, which is typically present in cells at low levels during anaerobic respiration, is a periplasmic-facing membrane-bound complex that functions as a proton pump to convert energy from hydrogen (H) oxidation into a proton gradient; consequently, its structure is of great interest. Empirically, the complex consists of a tightly bound core catalytic module, comprising large (HybC) and small (HybO) subunits, which is attached to an Fe-S protein (HybA) and an integral membrane protein (HybB). To date, efforts to gain a more detailed picture have been thwarted by low native expression levels of Hydrogenase-2 and the labile interaction between HybOC and HybA/HybB subunits. In the present paper, we describe a new overexpression system that has facilitated the determination of high-resolution crystal structures of HybOC and, hence, a prediction of the quaternary structure of the HybOCAB complex.
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http://dx.doi.org/10.1042/BCJ20180053 | DOI Listing |
Chem Sci
August 2023
University of Oxford, Department of Chemistry South Parks Road Oxford UK
The active site of [NiFe]-hydrogenases contains a strictly-conserved pendant arginine, the guanidine head group of which is suspended immediately above the Ni and Fe atoms. Replacement of this arginine (R479) in hydrogenase-2 from results in an enzyme that is isolated with a very tightly-bound diatomic ligand attached end-on to the Ni and stabilised by hydrogen bonding to the Nζ atom of the pendant lysine and one of the three additional water molecules located in the active site of the variant. The diatomic ligand is bound under oxidising conditions and is removed only after a prolonged period of reduction with H and reduced methyl viologen.
View Article and Find Full Text PDFSci Rep
December 2021
Institute for Biology/Microbiology, Martin-Luther University Halle-Wittenberg, Kurt-Mothes-Str. 3, 06120, Halle (Saale), Germany.
[NiFe]-hydrogenases activate dihydrogen. Like all [NiFe]-hydrogenases, hydrogenase 2 of Escherichia coli has a bimetallic NiFe(CN)CO cofactor in its catalytic subunit. Biosynthesis of the Fe(CN)CO group of the [NiFe]-cofactor occurs on a distinct scaffold complex comprising the HybG and HypD accessory proteins.
View Article and Find Full Text PDFFront Microbiol
September 2019
Institute of Microbiology, Martin-Luther University Halle-Wittenberg, Halle (Saale), Germany.
The active site of all [NiFe]-hydrogenases (Hyd) has a bimetallic NiFe(CN)CO cofactor that requires the combined action of several maturation proteins for its biosynthesis and insertion into the precursor form of the large subunit of the enzyme. Cofactor insertion is an intricately controlled process, and the large subunit of almost all Hyd enzymes has a C-terminal oligopeptide extension that is endoproteolytically removed as the final maturation step. This extension might serve either as one of the recognition motifs for the endoprotease, as well as an interaction platform for the maturation proteins, or it could have a structural role to ensure the active site cavity remains open until the cofactor is inserted.
View Article and Find Full Text PDFActa Crystallogr E Crystallogr Commun
April 2019
Department of Chemistry, University of California, Irvine, Natural Sciences II, Irvine, CA 92697, USA.
The reaction of Ni(TPAP)(COD) {where TPAP = [(NCH)CH]P(NCH)N} with Fe(CO) resulted in the isolation of the title heterobimetallic NiFe(TPAP)(CO) complex di-μ-carbonyl-tricarbon-yl[2,8,9-tris-(pyridin-2-yl-meth-yl)-2,5,8,9-tetra-aza-1-phosphabi-cyclo-[3.3.3]undeca-ne]ironnickel, [FeNi(CHNP)(CO)].
View Article and Find Full Text PDFMethods Enzymol
August 2019
Inorganic Chemistry Laboratory, University of Oxford, Oxford, United Kingdom.
The recent novel overproduction system for the membrane-bound oxygen-sensitive [NiFe]-hydrogenase-2 (Hyd-2) from Escherichia coli is detailed. Hyd-2 is an efficient and reversible catalyst for the interconversion of H and 2H. Produced at low levels during anaerobic respiration, Hyd-2 is instrumental in the generation of proton-motive force (PMF), and likewise uses PMF to generate H.
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