Benzoic acid/ester/amide derivatives are common moieties in pharmaceutical compounds and present a challenge in positional isomer identification by traditional tandem mass spectrometric analysis. A method is presented for exploiting the gas-phase neighboring group participation (NGP) effect to differentiate ortho-substituted benzoic acid/ester derivatives with high resolution mass spectrometry (HRMS). Significant water/alcohol loss (>30% abundance in MS spectra) was observed for ortho-substituted nucleophilic groups; these fragment peaks are not observable for the corresponding para and meta-substituted analogs. Experiments were also extended to the analysis of two intermediates in the synthesis of suvorexant (Belsomra) with additional analysis conducted with nuclear magnetic resonance (NMR), density functional theory (DFT), and ion mobility spectrometry-mass spectrometry (IMS-MS) studies. Significant water/alcohol loss was also observed for 1-substituted 1, 2, 3-triazoles but not for the isomeric 2-substituted 1, 2, 3-triazole analogs. IMS-MS, NMR, and DFT studies were conducted to show that the preferred orientation of the 2-substituted triazole rotamer was away from the electrophilic center of the reaction, whereas the 1-subtituted triazole was oriented in close proximity to the center. Abundance of NGP product was determined to be a product of three factors: (1) proton affinity of the nucleophilic group; (2) steric impact of the nucleophile; and (3) proximity of the nucleophile to carboxylic acid/ester functional groups. Graphical Abstract ᅟ.
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http://dx.doi.org/10.1007/s13361-017-1884-8 | DOI Listing |
Molecules
July 2024
Engineering Research Center of Sichuan-Tibet Traditional Medicinal Plant & School of Pharmacy, Chengdu University, Chengdu 610106, China.
Dalton Trans
December 2021
Institute for Materials Research, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan.
The synthesis of a series of -heteroleptic paddlewheel diruthenium(II,II) complexes with various hydroxy-substituted benzoate ligands, [Ru((OH)PhCO)(2,6-(CF)PhCO)(THF)] ([RuII,II2]) as tetrahydrofuran (THF) adducts is reported, where (OH)PhCO stands for -hydroxybenzoate (o-OH), -hydroxybenzoate (m-OH), -hydroxybenzoate (p-OH), 2,3-dihydroxybenzoate (2,3-(OH)2), 2,4-dihydroxybenzoate (2,4-(OH)2), 2,5-dihydroxybenzoate (2,5-(OH)2), 2,6-dihydroxybenzoate (2,6-(OH)2), or 3,4-dihydroxybenzoate (3,4-(OH)2), and 2,6-(CF)PhCO represents 2,6-bis(trifluoromethyl)benzoate. In this heteroleptic series, the redox potential () of the [RuII,II2]/[RuII,III2] couple in THF varies over a wide range, from -18 mV ( Ag/Ag) for p-OH to 432 mV for 2,6-(OH)2. The redox properties are linearly dependent on the acidity (p) of the OH-substituted benzoic acids, but do not depend on the number of -substituted hydroxy (-OH) groups.
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December 2020
Department of Physics, Ivanovo State University of Chemistry and Technology, 153000 Ivanovo, Russia.
Structural factors have been identified that determine the gas-phase acidity of -substituted benzenesulfonic acid, 2-XCH-SOH, (X = -SOH, -COOH, -NO, -SOF, -C≡N, -NH, -CH, -OCH, -N(CH), -OH). The DFT/B3LYP/cc-pVTZ method was used to perform conformational analysis and study the structural features of the molecular and deprotonated forms of these compounds. It has been shown that many of the conformers may contain anintramolecular hydrogen bond (IHB) between the sulfonic group and the substituent, and the sulfonic group can be an IHB donor or an acceptor.
View Article and Find Full Text PDFJ Med Chem
November 2019
Daiichi Sankyo Co., Ltd. , 3-5-1 Nihonbashi-honcho , Chuo-ku, Tokyo 103-8426 , Japan.
We report the discovery of a potent and isozyme-selective MTHFD2 inhibitor, DS18561882 (). Through investigation of the substituents on our tricyclic coumarin scaffold (1,2,3,4-tetrahydrochromeno[3,4-]pyridin-5-one), MTHFD2 inhibitory activity was shown to be elevated by incorporating an amine moiety at the 8-position and a methyl group at the 7-position of the initial lead . X-ray structure analysis revealed that a key interaction for enhanced potency was salt bridge formation between the amine moiety and the diphosphate linker of an NAD cofactor.
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August 2019
Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland.
A series of ditopic ion pair receptors equipped with 4-nitrophenylurea and 1-aza-18-crown-6-ether linked by ortho-(), meta-(), and para-() substituted benzoic acid were readily synthesized in three steps from commercially available materials. The binding properties of these regioisomeric receptors were determined using UV-vis and H NMR spectroscopy in MeCN and in the solid state by single-crystal X-ray diffraction crystallography. The solution studies revealed that, apart from carboxylates, all the anions tested formed stronger complexes in the presence of sodium cations.
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