Single-Molecule Kinetics of an Enzyme in the Presence of Multiple Substrates.

Chembiochem

Department of Chemistry, Indian Institutes of Science Education and Research, Dr. Homi Bhabha Road, Pune, 411008, Maharashtra, India.

Published: April 2018

Herein, the catalytic activity of a single enzyme in the presence of multiple substrates is studied. Three different mechanisms of bisubstrate binding, namely, ordered sequential, random sequential and ping-pong nonsequential pathway, are broadly discussed. By means of the chemical master equation approach, exact expressions for the waiting-time distributions, the mean turnover time and the randomness parameter as a function of the substrate concentration, such that both concentrations are fixed, but one of them is changed quasi-statically are obtained. The randomness parameter is not equal to unity at intermediate to high substrate concentrations, which indicates the presence of multiple rate-limiting steps in the reaction pathway in all three modes of bisubstrate binding. This arises due to transitions between the free enzyme and the enzyme-substrate complexes that occur on comparable timescales. Such turnover statistics of the single enzyme can also distinguish between the different types of bisubstrate binding mechanisms.

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http://dx.doi.org/10.1002/cbic.201700695DOI Listing

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