AI Article Synopsis

  • Anabaena sensory rhodopsin (ASR) is a microbial retinal protein that can bind two different isomers of a retinal compound, allowing for the study of protein interactions during the photo-isomerization reaction.
  • A detailed analysis using advanced spectroscopic techniques revealed differences in how ASR and its mutants respond to light, particularly in the isomerization reaction times for various mutants compared to the wild-type ASR.
  • The study also investigated how specific mutations affect absorption spectra, suggesting that electrostatic interactions play a key role in these changes, leading to accelerated or slowed reactions in certain isomers.

Article Abstract

Anabaena sensory rhodopsin (ASR) is a particular microbial retinal protein for which light-adaptation leads to the ability to bind both the all-trans, 15-anti (AT) and the 13-cis, 15-syn (13C) isomers of the protonated Schiff base of retinal (PSBR). In the context of obtaining insight into the mechanisms by which retinal proteins catalyse the PSBR photo-isomerization reaction, ASR is a model system allowing to study, within the same protein, the protein-PSBR interactions for two different PSBR conformers at the same time. A detailed analysis of the vibrational spectra of AT and 13C, and their photo-products in wild-type ASR obtained through femtosecond (pump-) four-wave-mixing is reported for the first time, and compared to bacterio- and channelrhodopsin. As part of an extensive study of ASR mutants with blue-shifted absorption spectra, we present here a detailed computational analysis of the origin of the mutation-induced blue-shift of the absorption spectra, and identify electrostatic interactions as dominating steric effects that would entail a red-shift. The excited state lifetimes and isomerization reaction times (IRT) for the three mutants V112N, W76F, and L83Q are studied experimentally by femtosecond broadband transient absorption spectroscopy. Interestingly, in all three mutants, isomerization is accelerated for AT with respect to wild-type ASR, and this the more, the shorter the wavelength of maximum absorption. On the contrary, the 13C photo-reaction is slightly slowed down, leading to an inversion of the ESLs of AT and 13C, with respect to wt-ASR, in the blue-most absorbing mutant L83Q. Possible mechanisms for these mutation effects, and their steric and electrostatic origins are discussed.

Download full-text PDF

Source
http://dx.doi.org/10.1039/c7fd00200aDOI Listing

Publication Analysis

Top Keywords

anabaena sensory
8
sensory rhodopsin
8
wild-type asr
8
absorption spectra
8
three mutants
8
asr
5
point mutations
4
mutations ultrafast
4
ultrafast photo-isomerization
4
photo-isomerization anabaena
4

Similar Publications

Modeling pH-Dependent Biomolecular Photochemistry.

J Chem Theory Comput

January 2024

Aix-Marseille Univ, CNRS, Institut de Chimie Radicalaire, 13013 Marseille, France.

The tuning mechanism of pH can be extremely challenging to model computationally in complex biological systems, especially with respect to the photochemical properties. This article reports a protocol aimed at modeling pH-dependent photodynamics using a combination of constant-pH molecular dynamics and semiclassical nonadiabatic molecular dynamics simulations. With retinal photoisomerization in Anabaena sensory rhodopsin (ASR) as a testbed, we show that our protocol produces pH-dependent photochemical properties, such as the isomerization quantum yield or decay rates.

View Article and Find Full Text PDF

Protein structure-function relationship serves as the primary learning outcome in any undergraduate biochemistry course. We expanded the protein structure-function exploration, PSFE initiative during COVID-19 to provide more effective and engaging experience to our undergraduates in biochemistry and independent research courses. Multiple alignments of protein sequences provided crucial insight into sequence conservation across many species and thus allow identification of those sections of the sequence most critical to protein function.

View Article and Find Full Text PDF

The decades-long ultrafast examination of nearly a dozen microbial retinal proteins, ion pumps, and sensory photoreceptors has not identified structure-function indicators which predict photoisomerization dynamics, whether it will be sub-picosecond and ballistic or drawn out with complex curve-crossing kinetics. Herein, we report the emergence of such an indicator. Using pH control over retinal isomer ratios, photoinduced transient absorption is recorded in an inward proton pumping Antarctic microbial rhodopsin (AntR) for 13- and retinal resting states.

View Article and Find Full Text PDF

Fragment Localized Molecular Orbitals.

J Chem Theory Comput

August 2022

Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy.

We introduce the concept of fragment localized molecular orbitals (FLMOs), which are Hartree-Fock molecular orbitals localized in specific fragments constituting a molecular system. In physical terms, we minimize the local electronic energies of the different fragments, at the cost of maximizing the repulsion between them. To showcase the approach, we rationalize the main interactions occurring in large biological systems in terms of interactions between the fragments of the system.

View Article and Find Full Text PDF

HwMR is a novel magnesium-associated protein.

Biophys J

July 2022

Department of Biochemical Science and Technology, College of Life Science, National Taiwan University, Taipei, Taiwan. Electronic address:

Microbial rhodopsins (MRho) are vital proteins in Haloarchaea for solar light sensing in extreme living environments. Among them, Haloquadratum walsbyi (Hw) is a species known to survive high MgCl concentrations, with a total of three MRhos identified, including a high-acid-tolerance light-driven proton outward pump, HwBR, a chloride-insensitive chloride pump, HwHR, and a functionally unknown HwMR. Here, we showed that HwMR is the sole magnesium-sensitive MRho among all tested MRho proteins from Haloarchaea.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!