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Angiogenesis and evading immune destruction are the main related transcriptomic characteristics to the invasive process of oral tongue cancer. | LitMetric

Angiogenesis and evading immune destruction are the main related transcriptomic characteristics to the invasive process of oral tongue cancer.

Sci Rep

Instituto de Bioquímica Médica Leopoldo de Meis, Centro de Ciências da Saúde, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil.

Published: January 2018

AI Article Synopsis

  • The study focuses on understanding the biochemistry of head and neck tumors to gain insights into their metastatic potential, which is linked to high mortality rates.* -
  • Researchers conducted RNA-Seq analyses on 5 different oral cancer cell lines to identify differentially expressed genes (DEGs) and their contributions to tumor invasion and metastatic progression.* -
  • Key findings include the identification of 26 consistently expressed genes throughout tumor progression, two novel metastatic markers (PIGG and SLC8B1), and several genes (MYH14, ANGPTL4, PPARD, ENPP1) that could be targeted for pharmacological interventions.*

Article Abstract

Metastasis of head and neck tumors is responsible for a high mortality rate. Understanding its biochemistry may allow insights into tumorigenesis. To that end we carried out RNA-Seq analyses of 5 SCC9 derived oral cancer cell lines displaying increased invasive potential. Differentially expressed genes (DEGs) were annotated based on p-values and false discovery rate (q-values). All 292 KEGG pathways related to the human genome were compared in order to pinpoint the absolute and relative contributions to the invasive process considering the 8 hallmarks of cancer plus 2 new defined categories, as well as we made with our transcriptomic data. In terms of absolute contribution, the highest correlations were associated to the categories of evading immune destruction and energy metabolism and for relative contributions, angiogenesis and evading immune destruction. DEGs were distributed into each one of all possible modes of regulation, regarding up, down and continuum expression, along the 3 stages of metastatic progression. For p-values twenty-six genes were consistently present along the tumoral progression and 4 for q-values. Among the DEGs, we found 2 novel potentially informative metastatic markers: PIGG and SLC8B1. Furthermore, interactome analysis showed that MYH14, ANGPTL4, PPARD and ENPP1 are amenable to pharmacological interventions.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5792437PMC
http://dx.doi.org/10.1038/s41598-017-19010-5DOI Listing

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