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DeepGOMeta for functional insights into microbial communities using deep learning-based protein function prediction.
Sci Rep
December 2024
KAUST Center of Excellence for Smart Health (KCSH), King Abdullah University of Science and Technology, Thuwal, 23955, Saudi Arabia.
Analyzing microbial samples remains computationally challenging due to their diversity and complexity. The lack of robust de novo protein function prediction methods exacerbates the difficulty in deriving functional insights from these samples. Traditional prediction methods, dependent on homology and sequence similarity, often fail to predict functions for novel proteins and proteins without known homologs.
View Article and Find Full Text PDFAvailability and occurrence of coelenterazine in a Swedish fjord to maintain Amphiura filiformis bioluminescence.
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December 2024
Marine Biology Laboratory, Earth and Life Institute, Université Catholique de Louvain, Croix du Sud 3, 1348, Louvain-La-Neuve, Belgium.
The bioluminescent European brittle star Amphiura filiformis produces blue light at the arm-spine level thanks to a biochemical reaction involving coelenterazine as substrate and a Renilla-like luciferase as an enzyme. This echinoderm light production depends on a trophic acquisition of the coelenterazine substrate. Without an exogenous supply of coelenterazine, this species loses its luminous capabilities.
View Article and Find Full Text PDFTesting how environmental variables affect the survival of freshwater turtle nests and hatchlings using artificial nests and dummy hatchlings.
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December 2024
Department of Ecology, Faculty of Sciences, Institute of Biology, University of Pécs, Ifjúság útja 6, Pécs, 7624, Hungary.
The European pond turtle (Emys orbicularis) is a wide-ranging, long-living freshwater species with low reproductive success, mainly due to high predation pressure. We studied how habitat variables and predator communities in near-natural marshes affect the survival of turtle eggs and hatchlings. We followed the survival of artificial turtle nests placed in marshes along Lake Balaton (Hungary) in May and June as well as hatchlings (dummies) exposed in September.
View Article and Find Full Text PDFContinual deep reinforcement learning with task-agnostic policy distillation.
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December 2024
Department of Informatics, University of Hamburg, Hamburg, Germany.
Central to the development of universal learning systems is the ability to solve multiple tasks without retraining from scratch when new data arrives. This is crucial because each task requires significant training time. Addressing the problem of continual learning necessitates various methods due to the complexity of the problem space.
View Article and Find Full Text PDFRoot exudates in mangrove forests accelerate bicarbonate production in the soil environment.
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December 2024
School of Environmental Science, The University of Shiga Prefecture, Hassakacho, Hikone, 2500, 522-8533, Japan.
Mangrove forests are increasingly recognized as vital blue carbon ecosystems due to their high carbon sequestration capacity, primarily through the accumulation of soil organic carbon (SOC). Recent research highlights that, in addition to SOC, dissolved inorganic carbon (DIC), particularly in the form of bicarbonate (HCO₃⁻), plays a crucial role in carbon sequestration by being exported from these ecosystems to adjacent coastal waters. This study aims to investigate the previously unexamined mechanisms behind bicarbonate production in mangrove soils.
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