Bacteriophages are among the most abundant and diverse biological units in the biosphere. They have contributed to our understanding of the central dogma of biology and have been instrumental in the evolutionary success of bacterial pathogens. In contrast to our current understanding of marine viral communities, the soil virome and its function in terrestrial ecosystems has remained relatively understudied. Here, we examine, in a comparative fashion, the knowledge gathered from studies performed in soil versus marine settings. We address the information with respect to the abundance, diversity, ecological significance, and effects of, in particular, bacteriophages on their host's evolutionary trajectories. We also identify the main challenges that soil virology faces and the studies that are required to accompany the current developments in marine settings.
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http://dx.doi.org/10.1016/j.tim.2017.12.004 | DOI Listing |
Extremophiles
December 2024
Laboratório de Ecologia E Biotecnologia Microbiana, Instituto de Microbiologia Paulo de Góes, Centro de Ciências da Saúde, Universidade Federal Do Rio de Janeiro (UFRJ), Bloco I, Rio de Janeiro (RJ), Brazil.
Since prophages can play a multifaceted role in bacterial evolution, this study aims to characterize the virome of Rummeliibacillus stabekisii, a bacterium isolated from different environments, including Antarctic soil and NASA spacecraft floors. From the analyses, it was found that the Antarctic strain, PP9, had the largest number of prophages, including intact ones, indicating potential benefits for survival in adverse conditions. In contrast, other strains harbored predominantly degenerate prophages, suggesting a dynamic process of gene gain and loss during evolution.
View Article and Find Full Text PDFYing Yong Sheng Tai Xue Bao
September 2024
School of Geographical Sciences/Fujian Provincial Key Laboratory of Subtropical Resources and Environment, Fujian Normal University, Fuzhou 350117, China.
We investigated the dynamics of soil viral community in plantations with different stand ages (8, 21, 27, and 40 years old) in a subtropical region. The viral metagenomics and bioinformatics analysis were used to analyze the compositional and functional differences of soil viral communities across different stand ages, and to explore the environmental driving factors. The results showed that tailed phages dominated soil viral community in subtropical plantations, with the highest proportion of Siphoviridae (19.
View Article and Find Full Text PDFSci Total Environ
December 2024
Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Gansu Gaolan Field Scientific Observation and Research Station for Agricultural Ecosystem, Lanzhou 730000, China; Key Laboratory of Stress Physiology and Ecology in Cold and Arid Region, Gansu Province, Lanzhou 730000, China. Electronic address:
The rhizosphere, where plant roots interact intensely with the soil, is a crucial but understudied area in terms of the impact of virus infection. In this study, we investigated the effects of lily symptomless virus (LSV) and cucumber mosaic virus (CMV) on the Lanzhou lily (Lilium davidii var. unicolor) rhizosphere using metagenomics and bioinformatics analysis.
View Article and Find Full Text PDFMicrobiome
October 2024
Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.
Background: Viruses, the majority of which are uncultivated, are among the most abundant biological entities on Earth. From altering microbial physiology to driving community dynamics, viruses are fundamental members of microbiomes. While the number of studies leveraging viral metagenomics (viromics) for studying uncultivated viruses is growing, standards for viromics research are lacking.
View Article and Find Full Text PDFPlant Dis
October 2024
Department of Plant and Environmental Protection Sciences, University of Hawaii, Honolulu, HI 96822.
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