AI Article Synopsis

  • Compartmental models help understand neuron computations but often require extensive tuning for versatility.
  • The T2N interface allows for easier control of NEURON with Matlab, creating stable and robust models over different neuron types and conditions.
  • The new model for dentate granule cells effectively simulates various experimental data and offers potential applications in large-scale network studies and degeneracy research.

Article Abstract

Compartmental models are the theoretical tool of choice for understanding single neuron computations. However, many models are incomplete, built ad hoc and require tuning for each novel condition rendering them of limited usability. Here, we present T2N, a powerful interface to control NEURON with Matlab and TREES toolbox, which supports generating models stable over a broad range of reconstructed and synthetic morphologies. We illustrate this for a novel, highly detailed active model of dentate granule cells (GCs) replicating a wide palette of experiments from various labs. By implementing known differences in ion channel composition and morphology, our model reproduces data from mouse or rat, mature or adult-born GCs as well as pharmacological interventions and epileptic conditions. This work sets a new benchmark for detailed compartmental modeling. T2N is suitable for creating robust models useful for large-scale networks that could lead to novel predictions. We discuss possible T2N application in degeneracy studies.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737656PMC
http://dx.doi.org/10.7554/eLife.26517DOI Listing

Publication Analysis

Top Keywords

mature adult-born
8
dentate granule
8
granule cells
8
t2n
4
t2n tool
4
tool robust
4
robust electrophysiological
4
electrophysiological modeling
4
modeling demonstrated
4
demonstrated mature
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!