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TabPath: interactive tables for metabolic pathway analysis. | LitMetric

TabPath: interactive tables for metabolic pathway analysis.

Bioinformatics

Laboratório Multiusuário de Bioinformática, Núcleo de Pesquisas em Ciências Biológicas, Universidade Federal de Ouro Preto, Ouro Preto, MG 35400-000, Brazil.

Published: March 2018

Motivation: Information about metabolic pathways in a comparative context is one of the most powerful tool to help the understanding of genome-based differences in phenotypes among organisms. Although several platforms exist that provide a wealth of information on metabolic pathways of diverse organisms, the comparison among organisms using metabolic pathways is still a difficult task.

Results: We present TabPath (Tables for Metabolic Pathway), a web-based tool to facilitate comparison of metabolic pathways in genomes based on KEGG. From a selection of pathways and genomes of interest on the menu, TabPath generates user-friendly tables that facilitate analysis of variations in metabolism among the selected organisms.

Availability And Implementation: TabPath is available at http://200.239.132.160:8686.

Contact: lmmorei@gmail.com.

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btx714DOI Listing

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