Metabolic capabilities of microorganisms include the production of secondary metabolites (e.g. antibiotics). The analysis of microbial volatile organic compounds (mVOCs) is an emerging research field with huge impact on medical, agricultural and biotechnical applied and basic science. The mVOC database (v1) has grown with microbiome research and integrated species information with data on emitted volatiles. Here, we present the mVOC 2.0 database with about 2000 compounds from almost 1000 species and new features to work with the database. The extended collection of compounds was augmented with data regarding mVOC-mediated effects on plants, fungi, bacteria and (in-)vertebrates. The mVOC database 2.0 now features a mass spectrum finder, which allows a quick mass spectrum comparison for compound identification and the generation of species-specific VOC signatures. Automatic updates, useful links and search for mVOC literature are also included. The mVOC database aggregates and refines available information regarding microbial volatiles, with the ultimate aim to provide a comprehensive and informative platform for scientists working in this research field. To address this need, we maintain a publicly available mVOC database at: http://bioinformatics.charite.de/mvoc.
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http://dx.doi.org/10.1093/nar/gkx1016 | DOI Listing |
Nucleic Acids Res
January 2025
Institute for Physiology & Science-IT, Charité - University Medicine Berlin, 10115 Berlin, Germany.
Metabolomic microbiome research has become an important topic for understanding agricultural, ecological as well as health correlations. Only the determination of both the non-volatile and the volatile organic compound (mVOC) production by microorganisms allows a holistic view for understanding the complete potential of metabolomes and metabolic capabilities of bacteria. In the recent past, more and more bacterial headspaces and culture media were analyzed, leading to an accumulation of about 3500 mVOCs in the updated mVOC 4.
View Article and Find Full Text PDFDtsch Arztebl Int
April 2024
Hygiene in healthcare facilities, Department of Infection and environmental hygiene, Health Department of Cologne, Germany; Institute and Outpatient Clinic for Occupational, Social and Environmental Medicine, Member of German Center for Lung Research (DZL), Comprehensive Pneumology Center (CPC München), Clinical Center of the Ludwig Maximilian University Munich, LMU Munich, Germany; Formerly: State Office for Social Services (LAsD) Schleswig-Holstein, Kiel, Germany; Helios Lung and Allergy Centre Bonn, Allergological-immunological laboratory, Germany; Institute for Translational Research, CECAD Cluster of Excellence, University of Cologne, Germany; Department I of Internal Medicine, University of Cologne, European Excellence Center for Invasive Fungal Infections (ECMM), Germany; Institute for Occupational, Social and Environmental Medicine, University Hospital RWTH Aachen, Germany; Laboratory Dr. Wisplinghoff; ZfMK - Center for Environment, Hygiene and Mycology, Cologne, Germany.
Analyst
November 2023
Department of Human Sciences, The Ohio State University, USA.
Secondary electrospray ionization high-resolution mass spectrometry (SESI-HRMS) is an innovative analytical technique for the rapid and non-invasive analysis of volatile organic compounds (VOCs). However, compound annotation and ion suppression in the SESI source has hindered feature detection, stability and reproducibility of SESI-HRMS in untargeted volatilomics. To address this, we have developed and optimized a novel pseudo-targeted approach, database-assisted globally optimized targeted (dGOT)-SESI-HRMS using the microbial-VOC (mVOC) database, and spectral stitching methods to enhance metabolite detection in headspace of anaerobic bacterial cultures.
View Article and Find Full Text PDFJ Cell Physiol
October 2024
State Key Laboratory of Crop Biology, Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect Pests, College of plant protection, Shandong Agricultural University, Tai'an, Shandong, P.R. China.
Front Microbiol
September 2020
Institute of Biological Science, University of Rostock, Rostock, Germany.
Microorganisms are diverse in their genome sequences and subsequently in their encoded metabolic pathways, which enabled them to adapt to numerous environmental conditions. They produce thousands of small molecules, many of which are volatiles in nature and play important roles in signaling in intra- and inter-species to kingdom and domain interactions, survival, or virulence. Many of these compounds have been studied, characterized, and organized in the mVOC 2.
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