Cobamides such as vitamin B are structurally conserved, cobalt-containing tetrapyrrole biomolecules that have essential biochemical functions in all domains of life. In organohalide respiration, a vital biological process for the global cycling of natural and anthropogenic organohalogens, cobamides are the requisite prosthetic groups for carbon-halogen bond-cleaving reductive dehalogenases. This study reports the biosynthesis of a new cobamide with unsubstituted purine as the lower base and assigns unsubstituted purine a biological function by demonstrating that Coα-purinyl-cobamide (purinyl-Cba) is the native prosthetic group in catalytically active tetrachloroethene reductive dehalogenases of Desulfitobacterium hafniense. Cobamides featuring different lower bases are not functionally equivalent, and purinyl-Cba elicits different physiological responses in corrinoid-auxotrophic, organohalide-respiring bacteria. Given that cobamide-dependent enzymes catalyze key steps in essential metabolic pathways, the discovery of a novel cobamide structure and the realization that lower bases can effectively modulate enzyme activities generate opportunities to manipulate functionalities of microbiomes.
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http://dx.doi.org/10.1038/nchembio.2512 | DOI Listing |
J Hazard Mater
December 2024
School of Environment and State Key Joint Laboratory of Environment Simulation and Pollution Control, China; State Environment Protection Key Laboratory of Microorganism Application and Risk Control, School of Environment, Tsinghua University, Beijing 100084, China; National Engineering Laboratory for Site Remediation Technologies, Beijing 100015, China. Electronic address:
In dense nonaqueous phase liquid (DNAPL) contaminant source zones, aqueous concentrations of trichloroethene (TCE) in groundwater may approach saturation levels (8.4 mM). It is generally believed that such saturation concentrations are toxic to organohalide-respiring bacteria (OHRB), thus limiting the effectiveness of bioremediation.
View Article and Find Full Text PDFEnviron Sci Technol
December 2024
Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning 110016, China.
Organohalide-respiring bacteria (OHRB) have been found in various environments and play an indispensable role in the biogeochemical cycling and detoxification of halogenated organic compounds (HOCs). Currently, few ORHB have been reported to perform reductive dechlorination under high salinity conditions, indicating a knowledge gap on the diversity of OHRB and the survival strategy of OHRB in saline environments (e.g.
View Article and Find Full Text PDFWater Res
December 2024
State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, PR China; State Key Laboratory of Urban Water Resource and Environment, School of Civil and Environmental Engineering, Harbin Institute of Technology Shenzhen, Shenzhen, 518055, PR China. Electronic address:
Organohalide-respiring bacteria (OHRB) play a key role in facilitating the detoxification of halogenated organics, but their slow growth and harsh growth conditions often limit their application in field remediation. In this study, we investigated the metabolic performance and organohalide respiration process of a non-obligate OHRB, Pseudomonas sp. CP-1, demonstrating favorable anaerobic reductive dechlorination ability of 2,4,6-trichlorophenol to 4-chlorophenol with a removal rate constant (k) of 0.
View Article and Find Full Text PDFEnviron Microbiome
December 2024
Department of Biological, Chemical and Pharmaceutical Sciences and Technologies (STeBiCeF), University of Palermo, Palermo, Italy.
Background: 1,2-dichloroethane (1,2-DCA) biodegradation can occur through aerobic or anaerobic pathways that can be exploited in bioremediation strategies. Bioremediation interventions are site specific and generally based on anaerobic pathways, nevertheless expanding knowledge on proper conditions favoring the biodegradation and especially on 1,2-DCA degrading microorganisms is crucial. In this work the intrinsic biodegradation potential of an aquifer impacted by Chlorinated Aliphatic Hydrocarbons (mainly 1,2-DCA) was evaluated by characterizing the aquifer microbiome across space and time and by setting up biostimulation treatments in microcosms under different aerobic and anaerobic conditions, in parallel.
View Article and Find Full Text PDFEnviron Sci Technol
December 2024
Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, Ontario M5S 3E5, Canada.
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