Fusions in a Wide Variety of Tumor Types Respond to Anti-ALK Targeted Therapy.

Background: Genomic fusions of the anaplastic lymphoma kinase gene () are a well-established therapy target in non-small cell lung cancer (NSCLC). From a survey of 114,200 clinical cases, we determined the prevalence of rearrangements (r) in non-NSCLC tumors and report their responsiveness to therapies targeting ALK.

Materials And Methods: Comprehensive genomic profiling of 114,200 relapsed and metastatic malignancies, including both solid tumors and hematolymphoid cancers, was performed using a hybrid-capture, adaptor ligation-based next-generation sequencing assay.

Results: Of 114,200 clinical samples, 21,522 (18.8%) were NSCLC and 92,678 (81.2%) were other tumor types. Of the 876 (0.8%) cases with fusions (f) or rALK, 675 (77.1%) were NSCLC and 201 (22.9%) were other tumor types. fusions were significantly more frequent in NSCLC (3.1%) than non-NSCLC (0.2%;  < .0001). Patients with non-NSCLC tumors harboring f were significantly younger ( < .0001) and more often female ( < .0001) than patients with f-positive NSCLC. was more often the fusion partner in NSCLC (83.5%) versus non-NSCLC tumors (30.9%;  < .0001).

Conclusion: rearrangements can be identified in a wide variety of epithelial and mesenchymal malignancies beyond NSCLC. Anti-ALK therapies can be effective in non-NSCLC tumors driven by f, and further study of therapies targeting in clinical trials involving a wider variety of cancer types appears warranted.

Implications For Practice: Rearrangements involving the gene have been detected in dozens of cancer types using next-generation sequencing. Patients whose tumors harbor rearrangements or fusions respond to treatment with crizotinib and alectinib, including tumors not normally associated with mutations, such as non-Langerhans cell histiocytosis or renal cell carcinoma. Comprehensive genomic profiling using next-generation sequencing can detect targetable fusions irrespective of tumor type or fusions partner.