Basidiomycete brown-rot fungi have a huge importance for wood decomposition and thus the global carbon cycle. Here, we present the genome sequence of GR9-4 which represent different clade than the previously sequenced North American isolate FP-58527 SS1. The genome was sequenced by using a paired-end sequence library of Illumina and a 2.5k and 5k mate-pair library (ABI SOLiD). The final assembly adds up to a size of 45 Mb (including gaps between contigs), with a GC-content of 56%. The gene prediction resulted in 13,888 gene models. The genome sequence will be used as a basis for understanding population genomics, genome-wide association studies and wood decay mechanisms of this brown-rot fungus.
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http://dx.doi.org/10.1016/j.dib.2017.09.043 | DOI Listing |
Genes (Basel)
December 2024
Liaoning Institute of Economic Forestry, Dalian 116031, China.
Background: Hazelnut (), a significant woody oil tree species in economic forests, faces production constraints due to biotic stresses, with Hazelnut Husk Brown Rot, caused by the pathogenic necrotrophic fungus (), being the most severe. To date, limited information is available regarding the resistance of hazelnuts to . To better understand the mechanisms of resistance to .
View Article and Find Full Text PDFJ Fungi (Basel)
January 2025
Department of Agricultural, Food and Environmental Sciences, Marche Polytechnic University, Via Brecce Bianche, 60131 Ancona, Italy.
is the most common and destructive brown rot agent on peaches. Knowledge of gene expression mediating host-pathogen interaction is essential to manage fungal plant diseases. putative virulence factors have been predicted by genome investigations.
View Article and Find Full Text PDFBiomacromolecules
January 2025
Faculty of Chemistry, Biotechnology, and Food Science, Norwegian University of Life Sciences (NMBU), P.O. Box 5003, Ås 1433, Norway.
Wood-degrading brown-rot fungi primarily target carbohydrates, leaving the lignin modified and potentially valuable for valorization. Here, we report a comprehensive comparison of how degrades hardwood and softwood, which have fundamentally different lignin structures. By harnessing the latest advancements in analytical methodologies, we show that removes more lignin from wood (up to 36%) than previously reported.
View Article and Find Full Text PDFPhytopathology
January 2025
Centro de Investigaciones Biologicas, Departament of Cellular and Molecular Biology, Ramiro de Maeztu, 9, Madrid, Madrid, Madrid, Spain, 28040.
Brown rot is a disease that affects stone and pome fruit crops worldwide. It is caused by fungal members of the genus , mainly , and . This study presents evidence that, despite having a very similar battery of Cell Wall Degrading Enzymes (CWDEs), the three species behave differently during the early stages of infection, suggesting differences at the regulatory level, which could also explain the differences in host preference among the three species.
View Article and Find Full Text PDFSci Rep
December 2024
United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology, Saiwai-cho, Fuchu, Tokyo, 183-8509, Japan.
Brown rot fungi, the major decomposers in the boreal coniferous forests, cause a unique wood decay pattern but many aspects of brown rot decay mechanisms remain unclear. In this study, decayed wood samples were prepared by cultivation of the brown rot fungi Gloeophyllum trabeum and Coniophora puteana on Japanese coniferous wood of Cryptomeria japonica, and the cutting planes were prepared using broad ion beam (BIB) milling, which enables observation of intact wood, in addition to traditional microtome sections. Samples were observed using field-emission SEM revealing that areas inside the end walls of ray parenchyma cells were the first to be degraded.
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