Nanopore Long-Read Guided Complete Genome Assembly of , and Genomic Insights into 4-Aminobenzenesulfonate, -Aminobenzoic Acid and Hydrogen Metabolism in the Genus .

Front Microbiol

Centre for Integrative Ecology, School of Life and Environmental Sciences, Deakin University, Geelong, VIC, Australia.

Published: October 2017

We improved upon the previously reported draft genome of strain PBC, a 4-aminobenzenesulfonate-degrading bacterium, by supplementing the assembly with Nanopore long reads which enabled the reconstruction of the genome as a single contig. From the complete genome, major genes responsible for the catabolism of 4-aminobenzenesulfonate in strain PBC are clustered in two distinct genomic regions. Although the catabolic genes for 4-sulfocatechol, the deaminated product of 4-aminobenzenesulfonate, are only found in , the operon responsible for the first deamination step of 4-aminobenzenesulfonate is conserved in various strains. The absence of gene in the complete genome of PBC is consistent with its -aminobenzoic acid (pABA) auxotrophy but surprisingly comparative genomics analysis of 14 genomes indicate that pABA auxotrophy is not an uncommon feature among members of this genus. Of even more interest, several strains do not possess the genomic potential for hydrogen oxidation, calling for a revision to the taxonomic description of as "hydrogen eating bacteria."

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5632844PMC
http://dx.doi.org/10.3389/fmicb.2017.01880DOI Listing

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