Cellular Approaches in Investigating Argonaute2-Dependent RNA Silencing.

Methods Mol Biol

Division of Endocrinology, Cincinnati Children's Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH, 45229, USA.

Published: May 2018

In mammals, there are four Argonaute (Ago) family proteins that play crucial roles in RNA silencing, a process wherein microRNA (miRNA) mediates inhibition of target mRNA translation. Among the Ago proteins, Argonaute2 (Ago2) uniquely possesses an endoribonuclease (slicer) activity that is critical for the biogenesis of specific miRNAs and mRNA cleavage. This Ago2 slicer activity is required for postnatal development. Despite its important roles, there are still gaps in our understanding of the mechanistic basis of Ago2's unique functions in vivo due to a limited availability of experimental tools. In order to investigate Ago2's functions, we generated a new cellular model of Ago2-deficiency in 3T3 mouse embryonic fibroblasts (MEFs). This cell line can be used for investigating general Ago2 functions, but also for further understanding of Ago2's unique characteristics including the slicer activity, specific amino acid residues, and domains in Ago2 by reconstitution of Ago2 mutants. Here, we describe the methods for establishing Ago2-deficient MEFs and for reconstituting the MEFs with an Ago2 mutant lacking its slicer activity by means of a retrovirus-mediated gene transfer.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8215940PMC
http://dx.doi.org/10.1007/978-1-4939-7339-2_14DOI Listing

Publication Analysis

Top Keywords

slicer activity
16
rna silencing
8
ago2's unique
8
ago2
6
cellular approaches
4
approaches investigating
4
investigating argonaute2-dependent
4
argonaute2-dependent rna
4
silencing mammals
4
mammals argonaute
4

Similar Publications

Introduction: Gadolinium-based T1-weighted MRI sequence is the gold standard for the detection of active multiple sclerosis (MS) lesions. The performance of machine learning (ML) and deep learning (DL) models in the classification of active and non-active MS lesions from the T2-weighted MRI images has been investigated in this study.

Methods: 107 Features of 75 active and 100 non-active MS lesions were extracted by using SegmentEditor and Radiomics modules of 3D slicer software.

View Article and Find Full Text PDF

Objectives: This study aimed to assess the efficacy of active presurgical orthopaedics appliances in infants presenting with complete unilateral cleft lip and overlapped alveolus (T-shaped alveolus).

Materials And Methods: A retrospective and prospective longitudinal study was performed. Infants diagnosed with complete unilateral cleft lip and overlapped alveolus, received treatment with the active presurgical orthopaedics appliances from June 2020 to June 2023, at Children's Hospital 1, Ho Chi Minh City.

View Article and Find Full Text PDF

OCT Radiomic Features Used for the Assessment of Activity of Thyroid Eye Disease.

J Craniofac Surg

September 2024

Beijing Tongren Eye Center, Beijing Tongren Hospital, Beijing Ophthalmology and Visual Science Key Lab, Capital Medical University, Beijing, China.

Article Synopsis
  • This study focused on creating deep-learning radiomics models using optical coherence tomography (OCT) scans to assess thyroid eye disease activity in 33 patients with 66 affected eyes.
  • Patients were classified into active and inactive groups based on their clinical activity scores, and OCT scans were analyzed to extract relevant features using advanced statistical methods.
  • The study found that the support vector machine (SVM) model had better performance for choroid features (AUC of 0.813) compared to retinal features in predicting disease activity, suggesting OCT-based analysis could improve clinical evaluations.
View Article and Find Full Text PDF

Filament Disturbance and Fusion during Embedded 3D Printing of Silicones.

ACS Biomater Sci Eng

October 2024

Material Measurement Laboratory, National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, Maryland 20899, United States.

Embedded 3D printing (EMB3D) is an additive manufacturing technique that enables complex fabrication of soft materials including tissues and silicones. In EMB3D, a nozzle writes continuous filaments into a support bath consisting of a yield stress fluid. Lack of fusion defects between filaments can occur because the nozzle pushes support fluid into existing filaments, preventing coalescence.

View Article and Find Full Text PDF

Background: Underlying disorders of the maxillary sinus (MS), including a history of sinus surgeries, chronic sinusitis, or congenital anomalies can potentially impact sinus function and structure, necessitating careful evaluation and management. Moreover, intact sinuses are crucial in gender determination in forensic anthropology. The present study was undertaken to check the accuracy and reliability of MS in gender determination using morphometric parameters.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!