The effect of the flexibility of hydrogen bonding network on low-frequency motions of amino acids. Evidence from Terahertz spectroscopy and DFT calculations.

Spectrochim Acta A Mol Biomol Spectrosc

MTA-PTE High-Field Terahertz Research Group, Ifjúság Street 6, Pécs H-7624, Hungary; Department of Experimental Physics, University of Pécs, Ifjúság Street 6, H-7624 Pécs, Hungary. Electronic address:

Published: February 2018

Low-frequency modes of L-Asp and L-Asn were studied in the range from 0.1 to 3.0THz using time-domain Terahertz spectroscopy and density functional theory calculation. The results show that PBE-D2 shows more success than BLYP-D2 in prediction of THz absorption spectra. To compare their low-frequency modes, we adopted "vibrational character ID strips" proposed by Schmuttenmaer and coworkers [Journal of Physical Chemistry B, 117, 10444(2013)]. We found that the most intense THz absorption peaks of two compounds both involve severe distortion of their hydrogen bonding networks. Due to less rigid hydrogen bonding network in L-Asp, the side chain (carboxyl group) of L-Asp exhibits larger motions than that (carboxamide group) of L-Asn in low-frequency modes.

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http://dx.doi.org/10.1016/j.saa.2017.09.035DOI Listing

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