Radical-Enhanced Acidity: Why Bicarbonate, Carboxyl, Hydroperoxyl, and Related Radicals Are So Acidic.

J Phys Chem A

EaStCHEM School of Chemistry, University of St. Andrews, St. Andrews, Fife, KY16 9ST, United Kingdom.

Published: October 2017

Comparison of accepted pK values of bicarbonate, carboxyl, and hydroperoxyl radicals, with those of models having the unpaired electron replaced by H atoms, implied the acidity of the radicals was greatly increased. A Density Functional Theory computational method of estimating pKs was developed and applied to a set of radicals designed to probe the phenomenon of radical-enhanced deprotonation (RED-shift) and its underlying causes. Comparison of the computed pK values of 12 acid radicals to those of the corresponding model acids confirmed the intensified acidity of the title radicals and also pin-pointed the carboxy-ethynyl (HOCC≡C) and the carboxy-aminyl (HOCNH) radicals as having enhanced acidity. The underlying cause was found to be extensive charge distribution away from the anionic O atoms of the conjugate radical anions, coupled with spin density displaced toward these O atoms. Ethyne spacers, between the radical and carboxylate centers, transmitted the effect extremely efficiently such that measurable enhancement was detectable up to at least six alkyne units. The bicyclo[1.1.1]pent-1-yl-3-carboxylic acid radical also displayed enhanced acidity, but additional cage units drastically attenuated the effect. Nitroxide radicals with suitably situated carboxylic acid substituents also exhibited enhanced acidity. Several families of potentially persistent radicals with enhanced acidity were identified.

Download full-text PDF

Source
http://dx.doi.org/10.1021/acs.jpca.7b08081DOI Listing

Publication Analysis

Top Keywords

enhanced acidity
16
radicals
9
bicarbonate carboxyl
8
carboxyl hydroperoxyl
8
hydroperoxyl radicals
8
radicals enhanced
8
acidity
6
radical-enhanced acidity
4
acidity bicarbonate
4
radicals acidic
4

Similar Publications

Cannabis use disorder affects up to 42% of individuals with schizophrenia, correlating with earlier onset, increased positive symptoms, and more frequent hospitalizations. This study employed an untargeted lipidomics approach to identify biomarkers in plasma samples from subjects with schizophrenia, cannabis use disorder, or both (dual diagnosis), aiming to elucidate the metabolic underpinnings of cannabis abuse and schizophrenia development. The use of liquid chromatography-high resolution mass spectrometry enabled the annotation of 119 metabolites, with the highest identification confidence level achieved for 16 compounds.

View Article and Find Full Text PDF

Heavy metals released from metallic sulfidic tailings pose significant environmental threats by contaminating surface and groundwater in mining areas. Sustainable rehabilitation methods are essential to remove or stabilize these metals, improving the quality of acid mine drainage and minimizing pollution. This study examines the adsorption capacity of zinc ions (Zn) by different iron-silicate mineral groups under natural weathering and bacteria-regulated weathered conditions.

View Article and Find Full Text PDF

Restorative Effects of Short-Chain Fatty Acids on Corneal Homeostasis Disrupted by Antibiotic-Induced Gut Dysbiosis.

Am J Pathol

December 2024

International Ocular Surface Research Center, Key Laboratory for Regenerative Medicine, Institute of Ophthalmology, Jinan University, Guangzhou 510632, China; Department of Ophthalmology, The First Affiliated Hospital of Jinan University, Jinan University, Guangzhou 510630, China. Electronic address:

The gut microbiota plays a crucial regulatory role in various physiological processes, yet its impact on corneal homeostasis remains insufficiently understood. Here, we investigate the effects of antibiotic-induced gut dysbiosis (AIGD) and germ-free (GF) conditions on circadian gene expression, barrier integrity, nerve density, and immune cell activity in the corneas of mice. Through RNA sequencing, we found that both AIGD and GF conditions significantly disrupted the overall transcriptomic profile and circadian transcriptomic oscillations in the cornea.

View Article and Find Full Text PDF

Lipid rafts are subdomains of the cell membrane that are rich in cholesterol and glycolipids, and they are involved in various cellular processes and pathophysiological mechanisms. However, the specific role of lipid rafts in hepatocyte dysfunction during the pathogenesis of metabolic dysfunction-associated steatotic liver disease (MASLD) is not fully understood. In this study, we investigated the impact of lipid rafts on insulin sensitivity and hepatocyte injury induced by saturated free fatty acids (sFFAs) using primary-cultured mouse hepatocytes.

View Article and Find Full Text PDF

Acyl-acyl carrier protein (acyl-ACP) reductase (AAR) is a crucial enzyme in alka(e)ne production by recombinant Escherichia coli (E. coli). Engineered AAR expressed in E.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!