Enzymes are biogenic catalysts that enable the vital activity of organisms. Enzymes promote reactions in a selective manner with a high level of substrate recognition ability. The development of such a sophisticated catalyst has been one of the goals for chemists. A synthetic peptide is the prime candidate to realize an enzyme-like catalyst. Considering that the catalytic function of enzymes derives from their molecular structures, the key for the creation of a peptide catalyst might be the introduction of a specific three-dimensional structure. Our motivation was to find a peptide catalyst with a versatile secondary structural framework and apply the peptide to a variety of selective reactions. Although helical-peptide-catalyzed asymmetric epoxidation of enones is popular, no other highly enantioselective reaction with a helical peptide has been reported. It was found that resin-supported α-helical polyleucine promoted asymmetric conjugate addition of a carbon nucleophile to enones via the formation of an iminium intermediate at the N-terminal amino group. By changing the helical chain to a repetitive Leu-Leu-Aib (Aib = α-aminoisobutyric acid) sequence and introducing a few amino acids to the N-terminus, a highly enantioselective peptide catalyst was obtained. The helical peptide catalyst was applicable for a tandem enamine/iminium-mediated reaction and asymmetric epoxidation of enones. Although the extension of the helical peptide to conjugate addition of a nucleophile to an enal was not successful simply by attaching proline to the N-terminus of the helix, the incorporation of a β-turn motif was effective to improve the catalytic performance. In the sequence of such a turn-helix-type peptide, the helical part was seemingly distant from the N-terminal amino group; however, the hydrophobicity, structure, and chirality of the helix largely affected the reaction. The turn-helix-type peptide promoted a wide range of asymmetric reactions: conjugated additions of hydride and carbon nucleophiles to enals via the iminium activation and α-oxyamination of aldehydes via the enamine activation. The peptides with turn-helix and helix frameworks were also employed for several reactions that were difficult to achieve with low-molecular-weight catalysts: enzyme-cocatalyzed asymmetric oxidation in water, diastereo- and enantioselective cyclopropanation, regioselective reduction of dienals, kinetic resolution of planar-chiral compounds, and desymmetrization to induce planar chirality. To explore other types of peptide catalysts, a combinatorial library screening was performed. On the way, it was revealed that a histidyl residue assisted to accelerate a reaction via reversible addition to an iminium intermediate. Through the screening of random peptide libraries, novel peptide sequences for efficient and enantioselective conjugate addition were discovered. Although we have no information about the molecular structure of the newly found peptides, they can be an entry point for establishing a versatile framework of peptide catalysts.
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http://dx.doi.org/10.1021/acs.accounts.7b00211 | DOI Listing |
Parkinsonism Relat Disord
December 2024
Department of Translational Neuroscience and the Muhammad Ali Parkinson Center, Barrow Neurological Institute, Phoenix, AZ, USA.
The α-synuclein seed amplification assay (αSyn-SAA) sensitively detects Lewy pathology, the amyloid state of α-synuclein, in the cerebrospinal fluid (CSF) of patients with Parkinson's disease (PD). The αSyn-SAA harnesses the physics of seeding, whereby a superconcentrated solution of recombinant α-synuclein lowers the thermodynamic threshold (nucleation barrier) for aggregated α-synuclein to act as a nucleation catalyst ("seed") to trigger the precipitation (nucleation) of monomeric α-synuclein into pathology. This laboratory setup increases the signal for identifying a catalyst if one is present in the tissue examined.
View Article and Find Full Text PDFmBio
January 2025
Department of Microbiology, University of Illinois Urbana-Champaign, Champaign, Illinois, USA.
Methyl-coenzyme M reductase (MCR), the key catalyst in the anoxic production and consumption of methane, contains an unusual 2-methylglutamine residue within its active site. data show that a B12-dependent radical SAM (rSAM) enzyme, designated MgmA, is responsible for this post-translational modification (PTM). Here, we show that two different MgmA homologs are able to methylate MCR when expressed in , an organism that does not normally possess this PTM.
View Article and Find Full Text PDFMolecules
December 2024
College of Chemistry and Chemical Engineering, China University of Petroleum, Qingdao 266580, China.
As a key means to solve energy and environmental problems, photocatalytic technology has made remarkable progress in recent years. Organic semiconductor materials offer structural diversity and tunable energy levels and thus attracted great attention. Among them, porphyrin and its derivatives show great potential in photocatalytic reactions and light therapy due to their unique large-π conjugation structure, high apparent quantum efficiency, tailorable functionality, and excellent biocompatibility.
View Article and Find Full Text PDF3 Biotech
January 2025
Peptide and Medicinal Chemistry Research Laboratory, Department of Chemistry, Rani Channamma University, P-B, NH-4, Belagavi, 591 156 India.
Unlabelled: We have developed novel and sustainable homogeneous catalysts employing Glutamic acid (Glu) as a biodegradable and eco-friendly organocatalyst for the synthesis of -(4-oxo-2-phenyl-1,2-dihydroquinazolin-3(4)-yl)isonicotinamide derivatives (-) via multicomponent reactions (MCRs) of isatoic anhydride, isoniazid and heteroaromatic/aromatic aldehyde in ethanol on oil bath stirring at 60 °C. Selected final product homogeneity was examined by various spectroscopic techniques such as C-, H- NMR, FT-IR and LC-MS. For the first time, herein investigated electrochemical behavior of selected derivatives (-) using cyclic voltammetry method.
View Article and Find Full Text PDFChembiochem
December 2024
University of Minnesota, Department of Genetics, Cell Biology, and Development, MCB 5-130, 420 Washington Avenue SE, 55455, Minneapolis, UNITED STATES OF AMERICA.
RNA exhibits remarkable capacity as a functional polymer, with broader catalytic and ligand-binding capability than previously thought. Despite this, the low side chain diversity present in nucleic acids (two purines and two pyrimidines) relative to proteins (20+ side chains of varied charge, polarity, and chemical functionality) limits the capacity of functional RNAs to act as environmentally responsive polymers, as is possible for peptide-based receptors and catalysts. Here we show that incorporation of the modified nucleobase 2-thiouridine (2sU) into functional (aptamer and ribozyme) RNAs produces functionally inactivated polymers that can be activated by oxidative treatment.
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