Deeper understanding of processes of protein misfolding, aggregation, formation of oligomers, protofibrils, and fibrils is crucial for the development of future medicine in treatment of amyloid-related diseases. While numerous reports illuminate the field, the above processes are extremely complex, as they depend on many varying parameters, such as the peptide concentration, temperature, pH, presence of metal ions, lipids, and organic solvents. Different mechanisms of amyloid fibril formation have been proposed, but the process of the oligomer-to-fibril transition is the least agreed upon. Our studies of a number of amyloidogenic proteins and peptides (insulin, Aβ peptides, the Bgl2 protein from the yeast cell wall), as well as their amyloidogenic fragments, have allowed us to propose a model of the fibril structure generation. We have found that the main building block of fibrils of any morphology is a ring-like oligomer. The varying models of interaction of ring oligomers with each other revealed in our studies make it possible to explain their polymorphism. Crucially, the amino acid sequence determines the oligomer structure for the given protein/peptide.
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http://dx.doi.org/10.3233/JAD-170230 | DOI Listing |
J Bacteriol
December 2024
Department of Biological Chemistry, The Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
is an environmentally acquired pathogen that causes respiratory disease in humans. While the discovery of is relatively recent compared to other bacterial pathogens, over the past 50 years, has emerged as a powerhouse for studying host-pathogen interactions. In its natural habitat of fresh water, interacts with a diverse array of protozoan hosts and readily evolve to expand their host range.
View Article and Find Full Text PDFPhys Rev E
September 2024
National Center for Radioprotection and Computational Physics, Istituto Superiore di Sanità, 00169 Roma, Italy.
Populations of spiking neuron models have densities of their microscopic variables (e.g., single-cell membrane potentials) whose evolution fully capture the collective dynamics of biological networks, even outside equilibrium.
View Article and Find Full Text PDFWe present a comprehensive study on the best practices for integrating first principles simulations in experimental quadrupolar solid-state nuclear magnetic resonance (SS-NMR), exploiting the synergies between theory and experiment for achieving the optimal interpretation of both. Most high performance materials (HPMs), such as battery electrodes, exhibit complex SS-NMR spectra due to dynamic effects or amorphous phases. NMR crystallography for such challenging materials requires reliable, accurate, efficient computational methods for calculating NMR observables from first principles for the transfer between theoretical material structure models and the interpretation of their experimental SS-NMR spectra.
View Article and Find Full Text PDFVavilovskii Zhurnal Genet Selektsii
September 2024
Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia Novosibirsk State University, Novosibirsk, Russia.
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