A new nuclear DNA marker from ubiquitin ligase gene region for genetic diversity detection of walnut germplasm resources.

Biotechnol Rep (Amst)

Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, 20 Nanxincun, Haidian District, Beijing 100093, China.

Published: March 2015

Development of more sensitive nuclear DNA markers for identification of species, particularly closely allied taxa has been a challenging task that has attracted interest from scientists in fields of biotechnological development and genetic diversity detection. In this study, the sequence of the ubiquitin ligase gene () region of nuclear DNA was tested for applicability and efficacy in revealing genetic diversity of walnut resources, with an emphasis on inter- and intra-specific levels. Analysis on genetic relationship among the taxa was conducted with the neighbor-joining (NJ) method. The number of variable bases in the region was 20 sites. All nine taxa (species/variety/cultivars) were distinguished using the sequence. In addition, each taxon was characterized molecularly with a unique nucleotide molecular formula using ten variable base sites derived from the nuclear DNA gene sequence. This study presents a good complementary methodology for developing new DNA markers for identification of genus .

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5466192PMC
http://dx.doi.org/10.1016/j.btre.2014.11.003DOI Listing

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