rdml: A Mathematica package for parsing and importing Real-Time qPCR data.

BMC Res Notes

CBMR, Centre for Biomedical Research, University of Algarve, 8005-139, Faro, Portugal.

Published: June 2017

Objective: The purpose and objective of the research presented is to provide a package for easy importing of Real-Time PCR data markup language (RDML) data to Mathematica.

Results: Real-Time qPCR is the most widely used experimental method for the accurate quantification of gene expression. To enable the straightforward archiving and sharing of qPCR data and its associated experimental information, an XML-based data standard was developed-the Real-Time PCR data markup language (RDML)-devised by the RDML consortium. Here, we present rdml, a package to parse and import RDML data into Mathematica, allowing the quick loading and extraction of relevant data, thus promoting the re-analysis, meta-analysis or experimental re-validation of gene expression data deposited in RDML format.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5469176PMC
http://dx.doi.org/10.1186/s13104-017-2533-9DOI Listing

Publication Analysis

Top Keywords

data
9
importing real-time
8
real-time qpcr
8
qpcr data
8
real-time pcr
8
pcr data
8
data markup
8
markup language
8
rdml data
8
gene expression
8

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!