Theoretical models and computer simulations of the genetic structure of a continuous population predict the existence of patches of highly inbred individuals when gene flow within the population is limited. A map of the three genotypes of a two-allele locus is expected to exhibit patches of homozygotes embedded in a matrix of heterozygotes, when gene flow is limited. A search for such patch structure was made on a 160 × 160 m plot within a continuous 60+ ha old-growth stand of Quercus laevis (turkey oak). Approximately 3400 trees were genotyped for 9 polymorphic loci using starch-gel electrophoresis, and the genetic structure was analyzed with spatial autocorrelation (both nominal and interval), hierarchical F statistics, and number-of-alleles-in-common. Adults (diameter at breast height > 0) and juveniles were analyzed separately but showed similar structure. While no distinct patch structure was found, a greater degree of relatedness was observed on a scale of 5 m-10 m than at greater distances, probably because of the limited acorn dispersal from maternal trees and a small amount of cloning by root sprouts. A computer simulation of a 10,000 tree forest breeding for 10,000 yr indicates that the effective neighborhood sizes (of randomly drawn seed- and pollen-donors) are both in excess of 440 individuals. The model thus cannot distinguish the observed data from panmictic mating.
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http://dx.doi.org/10.1111/j.1558-5646.1995.tb05963.x | DOI Listing |
Alzheimers Dement
January 2025
Department of Neurology, Washington University School of Medicine, St. Louis, Missouri, USA.
Introduction: Alzheimer's disease (AD) in Down syndrome (DS) is associated with changes in brain structure. It is unknown if thickness and volumetric changes can identify AD stages and if they are similar to other genetic forms of AD.
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Plant Genome
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Department of Fundamental Medicine, Chengdu University of Traditional Chinese Medicine, Chengdu, China.
The plant Polygonum capitatum (P. capitatum) contains a variety of flavonoids that are distributed differently among different parts. Nevertheless, differentially expressed genes (DEGs) associated with this heterogeneous distribution have not been identified.
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Key Laboratory of Ministry of Agriculture for Germplasm Resources Conservation and Utilization of Cassava, Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, China.
This study aimed to prepare a composite film by blending cross-linked tapioca starch (CLTS) with sodium alginate (SA), silver nanoparticles (AgNPs), and ZnO nanoparticles (ZnOs). The effects of SA, AgNPs, and ZnOs at different concentrations (1-3 wt%) on the mechanical properties, optical properties, thermal stability, and antibacterial activity of cross-linked starch films were also investigated. The structures of the films were examined by Fourier transform infrared spectroscopy and X-ray diffraction.
View Article and Find Full Text PDFPeerJ
January 2025
Department of Computer Science, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America.
Despite the recent surge of viral metagenomic studies, it remains a significant challenge to recover complete virus genomes from metagenomic data. The majority of viral contigs generated from de novo assembly programs are highly fragmented, presenting significant challenges to downstream analysis and inference. To address this issue, we have developed Virseqimprover, a computational pipeline that can extend assembled contigs to complete or nearly complete genomes while maintaining extension quality.
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Department of Radiology and Imaging, Grande International Hospital, Kathmandu, Nepal.
Kartagener syndrome is a rare ciliopathic genetic disorder characterized by a triad of chronic sinusitis, situs inversus, and bronchiectasis. The underlying pathophysiology involves reduced ciliary motility due to defects in ciliary structure and function within the respiratory tract and fallopian tubes. Diagnosis is typically confirmed through imaging studies such as X-rays, CT scans, and echocardiograms, which reveal the abnormal orientation of the heart and other organs.
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