Although empirical studies frequently suggest that genotype-by-environment (G X E) interaction can maintain genetic variation, very few data are available to test for the specific conditions necessary for the existence of a protected polymorphism (i.e., the property of persistence of an allele even when initially rare). Drosophila species live in patchy environments and their local population structure may be characterized to some extent by Levene's migration pattern, namely by a single pool of individuals that presumably mate at random and breed on discrete and ephemeral resources. We present here a field experiment that links Drosophila ecology and population genetics, which used the alcohol dehydrogenase (Adh) and α-glycerophosphate dehydrogenase (αGpdh) polymorphic loci in D. melanogaster flies raised from Opuntia ficus-indica fruits (prickly pears). The results show that there is density-dependent mortality in those fruits with a relatively high number of larvae (i.e., selection is "soft") and suggest that there is differential viability for αGpdh genotypes. Additionally, a pattern of G X E interaction for fitness values, which is fully compatible with the theoretical conditions required for the existence of a protected polymorphism, was found after weighting the fitness estimates by the relative contribution that each fruit makes to the total adult population. The strong association between Adh and αGpdh alleles suggests that the occurrence of the common cosmopolitan inversion In(2L)t in the population might be responsible for the negative frequency-dependent selection predicted by Levene's model when genetic variation persists in heterogeneous environments.
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http://dx.doi.org/10.1111/j.1558-5646.1999.tb05343.x | DOI Listing |
J Sci Food Agric
January 2025
Agriculture & Agri-Food Canada, Morden Research and Development Centre, Morden, Canada.
Sci Rep
December 2024
College of Agronomy, Xinjiang Agricultural University, Urumqi, 830052, Xinjiang, China.
Brace roots are the primary organs for water and nutrient absorption, and play an important role in lodging resistance. Dissecting the genetic basis of brace root traits will facilitate breeding new varieties with lodging resistance and high yield. In present study, genome-wide association study (GWAS) and genomic selection (GS) for brace root penetrometer resistance (PR), root number (RN), and tier number (TN) were conducted in a multi-parent doubled haploid (DH) population.
View Article and Find Full Text PDFFront Artif Intell
December 2024
School of Industrial Engineering and Management, Oklahoma State University, Stillwater, OK, United States.
The ability to accurately predict the yields of different crop genotypes in response to weather variability is crucial for developing climate resilient crop cultivars. Genotype-environment interactions introduce large variations in crop-climate responses, and are hard to factor in to breeding programs. Data-driven approaches, particularly those based on machine learning, can help guide breeding efforts by factoring in genotype-environment interactions when making yield predictions.
View Article and Find Full Text PDFBMC Genomics
December 2024
Feed and Forage Development, International Livestock Research Institute, Addis Ababa, Ethiopia.
Background: Lablab is one of the conventionally grown multi-purpose crops that originated in Africa. It is an annual or short-lived perennial forage legume which has versatile uses (as a vegetable and dry seeds, as food or feed, or as green manure) but is yet to receive adequate research attention and hence remains underexploited. To develop new and highly productive lablab varieties, using genomics-assisted selection, the present study aimed to identify quantitative trait loci associated with agronomically important traits in lablab and to assess the stability of these traits across two different agro-ecologies in Ethiopia.
View Article and Find Full Text PDFMol Ecol
December 2024
Key Laboratory of Breeding Biotechnology and Sustainable Aquaculture (CAS), Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China.
Phenotypic plasticity plays an essential role in adaptive evolution. However, the molecular mechanisms of how genotype-by-environment interaction (G × E) effects shape phenotypic plasticity in marine organisms remain poorly understood. The crucial temperature-responsive trait triacylglycerol (TAG) content and its major gene adipose triglyceride lipase (Atgl) expression have divergent plastic patterns in two congeneric oyster species (Crassostrea gigas and Crassostrea angulata) to adapt to relative-cold/northern and relative-warm/southern habitats, respectively.
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