Reference Gene Selection for qRT-PCR Normalization Analysis in kenaf ( L.) under Abiotic Stress and Hormonal Stimuli.

Front Plant Sci

State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Key Laboratory for Genetics, Breeding and Multiple Utilization of Crops, Fujian Agriculture and Forestry UniversityFuzhou, China.

Published: May 2017

AI Article Synopsis

  • Kenaf is an eco-friendly fiber crop that can tolerate various abiotic stresses, making it important for studying plant responses.
  • The study assessed the stability of nine candidate reference genes for normalizing gene expression in kenaf under different stress and hormone conditions using specific algorithms (geNorm, NormFinder, BestKeeper).
  • The findings identified two optimal reference genes for accuracy in qRT-PCR, while one gene was deemed unsuitable, aiding future research on stress tolerance and signaling in kenaf.

Article Abstract

Kenaf ( L.), an environmental friendly and economic fiber crop, has a certain tolerance to abiotic stresses. Identification of reliable reference genes for transcript normalization of stress responsive genes expression by quantitative real-time PCR (qRT-PCR) is important for exploring the molecular mechanisms of plants response to abiotic stresses. In this study, nine candidate reference genes were cloned, and their expression stabilities were assessed in 132 abiotic stress and hormonal stimuli samples of kenaf using geNorm, NormFinder, and BestKeeper algorithms. Results revealed that () and () were the optimum reference genes across all samples; () was the worst reference gene for transcript normalization. The reliability of the selected reference genes was further confirmed by evaluating the expression profile of gene at different stress durations. This work will benefit future studies on discovery of stress-tolerance genes and stress-signaling pathways in this important fiber crop.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5427111PMC
http://dx.doi.org/10.3389/fpls.2017.00771DOI Listing

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