Genetic variation and RNA structure regulate microRNA biogenesis.

Nat Commun

MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Genome Regulation Section, Western General Hospital, University of Edinburgh, Edinburgh EH4 2XU, UK.

Published: May 2017

AI Article Synopsis

  • MiRNA biogenesis is tightly regulated after transcription, but the influence of RNA sequence and structure on this process is not well understood.
  • A specific genetic variation (G to A substitution) in the pri-mir-30c-1 region has been linked to higher levels of mature miRNA in cancer patients, affecting how Drosha processes this RNA.
  • The study shows that this variation changes RNA structure, promoting the binding of SRSF3, which enhances the processing of pri-miRNA, thus emphasizing the importance of RNA structure in miRNA biogenesis.

Article Abstract

MiRNA biogenesis is highly regulated at the post-transcriptional level; however, the role of sequence and secondary RNA structure in this process has not been extensively studied. A single G to A substitution present in the terminal loop of pri-mir-30c-1 in breast and gastric cancer patients had been previously described to result in increased levels of mature miRNA. Here, we report that this genetic variant directly affects Drosha-mediated processing of pri-mir-30c-1 in vitro and in cultured cells. Structural analysis of this variant revealed an altered RNA structure that facilitates the interaction with SRSF3, an SR protein family member that promotes pri-miRNA processing. Our results are compatible with a model whereby a genetic variant in pri-mir-30c-1 leads to a secondary RNA structure rearrangement that facilitates binding of SRSF3 resulting in increased levels of miR-30c. These data highlight that primary sequence determinants and RNA structure are key regulators of miRNA biogenesis.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5418625PMC
http://dx.doi.org/10.1038/ncomms15114DOI Listing

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