Bacterial type 2 secretion systems (T2SS), type 4 pili, and archaeal flagella assemble fibres from initially membrane-embedded pseudopilin and pilin subunits. Fibre subunits are made as precursors with positively charged N-terminal anchors, whose cleavage via the prepilin peptidase, essential for pilin membrane extraction and assembly, is followed by N-methylation of the mature (pseudo)pilin N terminus. The conserved Glu residue at position 5 (E5) of mature (pseudo)pilins is essential for assembly. Unlike T4 pilins, where E5 residue substitutions also abolish N-methylation, the E5A variant of T2SS pseudopilin PulG remains N-methylated but is affected in interaction with the T2SS component PulM. Here, biochemical and functional analyses showed that the PulM interaction defect only partly accounts for the PulG assembly defect. First, PulG variant, equally defective in PulM interaction, remained partially functional. Furthermore, pseudopilus assembly defect of pulG(E5A) mutant was stronger than that of the pulM deletion mutant. To understand the dominant effect of E5A mutation, we used molecular dynamics simulations of PulG, methylated PulG (MePulG), and MePulG variant in a model membrane. These simulations pointed to a key role for an intramolecular interaction between the pseudopilin N-terminal amine and E5 to limit polar interactions with membrane phospholipids. N-methylation of the N-terminal amine further limited its interactions with phospholipid head-groups to facilitate pseudopilin membrane escape. By binding to polar residues in the conserved N-terminal region of PulG, we propose that PulM acts as chaperone to promote pseudopilin recruitment and coordinate its membrane extraction with subsequent steps of the fibre assembly process.
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http://dx.doi.org/10.1016/j.jmb.2017.04.005 | DOI Listing |
Protein Sci
February 2025
Cell Physiology and Molecular Biophysics Department, Center for Membrane Protein Research, Texas Tech University Health Sciences Center, Lubbock, Texas, USA.
Purifying membrane proteins has been the limiting step for studying their structure and function. The challenges of the process include the low expression levels in heterologous systems and the requirement for their biochemical stabilization in solution. The human voltage-gated proton channel (hH1) is a good example of that: the published protocols to express and purify hH1 produce low protein quantities at high costs, which is an issue for systematically characterizing its structure and function.
View Article and Find Full Text PDFEur J Nucl Med Mol Imaging
January 2025
Department of Nuclear Medicine, Xiangya Hospital, Central South University, No. 87 Xiangya Road, Changsha, Hunan, 410008, P.R. China.
Purpose: To develop and validate a prostate-specific membrane antigen (PSMA) PET/CT based multimodal deep learning model for predicting pathological lymph node invasion (LNI) in prostate cancer (PCa) patients identified as candidates for extended pelvic lymph node dissection (ePLND) by preoperative nomograms.
Methods: [Ga]Ga-PSMA-617 PET/CT scan of 116 eligible PCa patients (82 in the training cohort and 34 in the test cohort) who underwent radical prostatectomy with ePLND were analyzed in our study. The Med3D deep learning network was utilized to extract discriminative features from the entire prostate volume of interest on the PET/CT images.
J Environ Manage
January 2025
State Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing, 100190, PR China; School of Chemical Engineering, University of Chinese Academy of Sciences, Beijing, 100049, PR China. Electronic address:
Xylooligosaccharides (XOS), consisting 2-6 xylose residues, are a new type of prebiotic and functional oligosaccharides, and can usually be produced from the xylan-riched lignocellulosic biomass by acetic acid (HAc) hydrolysis, while the waste HAc was a problem to the environment. In this study, the main aim was to recover and reuse the waste HAc in XOS production. First, it was found that a temperature of 190 °C and a hydrolysis time of 60 min were favorable for XOS production by HAc hydrolysis, and the by-products xylose and furfural were the main inhibitors, hindering the reuse of the waste HAc.
View Article and Find Full Text PDFTalanta
January 2025
School of Pharmacy, Shenyang Pharmaceutical University, Shenyang, 110016, PR China. Electronic address:
Monitoring of p-nitrophenol (PNP) and 3-methyl-4-nitrophenol (PNMC) in human urine and environmental water is of great importance for human health assessment and environmental protection, as they are both urinary metabolites of some poisonous pesticides and priority environmental pollutants. However, efficient extraction of trace levels of PNP and PNMC from complex matrices remains challenging. This study presented the synthesis of histidine-modified ZIF-90 on natural eggshell membrane (ESM@His-ZIF-90) via a facile one-step in-situ growth strategy, and its application as an adsorbent for dispersive membrane extraction (DME) of PNP and PNMC in human urine and environmental water.
View Article and Find Full Text PDFInt J Biol Macromol
January 2025
College of Chemistry and Chemical Engineering, Qingdao University of Science and Technology, Qingdao 266042, China. Electronic address:
A vast sum of fish waste is being annually discarded by marine fishing industries imposing serious environmental pollution concerns. However, these aquatic discarded matters are captivating sources of collagen, a fibrous protein with eminent social and economic relevance. Collagen is conventionally recovered using outdated complex processes requiring many reagents, multiple steps, and extended periods.
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