Comparative Genomics of and to Reveal Gene Orthologs Involved in Infection by .

Front Microbiol

UMR 177, Institut de Recherche pour le Développement-CIRAD, CIRAD TA A-17/GMontpellier, France.

Published: April 2017

Blood-feeding (Gpg) fly transmits the single-celled eukaryotic parasite (Tbg), the second fly African trypanosome pair being /.brucei rhodesiense. Whatever the subspecies, whereas the onset of their developmental program in the zoo-anthropophilic blood feeding flies does unfold in the fly midgut, its completion is taking place in the fly salivary gland where does emerge a low size metacyclic trypomastigote population displaying features that account for its establishment in mammals-human individuals included. Considering that the two - pairs introduced above share similarity with respect to the developmental program of this African parasite, we were curious to map on the (Gmm), the Differentially Expressed Genes (DEGs) we listed in a previous study. Briefly, using the gut samples collected at days 3, 10, and 20 from Gpg that were fed or not at day 0 on Tbg-hosting mice, these DGE lists were obtained from RNA seq-based approaches. Here, post the mapping on the quality controlled DEGs on the Gmm genome, the identified ortholog genes were further annotated, the resulting datasets being compared. Around 50% of the Gpg DEGs were shown to have orthologs in the Gmm genome. Under one of the three midgut sampling conditions, the number of DEGs was even higher when mapping on the Gmm genome than initially recorded. Many Gmm genes annotated as "Hypothetical" were mapped and annotated on many distinct databases allowing some of them to be properly identified. We identify fly candidate genes encoding (a) a broad panel of proteases as well as (b) chitin-binding proteins, (c) antimicrobial peptide production-Pro3 protein, transferrin, mucin, atttacin, cecropin, etc-to further select in functional studies, the objectives being to probe and validated fly genome manipulation that prevents the onset of the developmental program of one or the other spp. stumpy form sampled by one of the other bloodfeeding subspecies.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5376623PMC
http://dx.doi.org/10.3389/fmicb.2017.00540DOI Listing

Publication Analysis

Top Keywords

developmental program
12
gmm genome
12
onset developmental
8
genes annotated
8
fly
6
gmm
5
comparative genomics
4
genomics reveal
4
reveal gene
4
gene orthologs
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!