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Genomic and Phenomic Screens for Flower Related RING Type Ubiquitin E3 Ligases in . | LitMetric

AI Article Synopsis

  • - Flowering time in plants is controlled by a combination of internal (endogenous) and external (environmental) signals, with complex pathways and molecular networks mediating these signals.
  • - A genomic approach was used to explore the role of ubiquitin signaling, particularly focusing on RING type ubiquitin E3 ligases, which play a crucial role in the regulation of flowering and floral organ development.
  • - Researchers categorized these ligases based on their expression patterns in various flower organs and developmental stages, and developed a workflow for high-throughput screening of nearly a thousand plants to study growth and morphology.

Article Abstract

Flowering time control integrates endogenous as well as environmental signals to promote flower development. The pathways and molecular networks involved are complex and integrate many modes of signal transduction. In plants ubiquitin mediated protein degradation pathway has been proposed to be as important mode of signaling as phosphorylation and transcription. To systematically study the role of ubiquitin signaling in the molecular regulation of flowering we have taken a genomic approach to identify flower related Ubiquitin Proteasome System components. As a large and versatile gene family the RING type ubiquitin E3 ligases were chosen as targets of the genomic screen. The complete list of RING E3 ligases were retrieved and verified in the genome v11 and their differential expression was used for their categorization into flower organs or developmental stages. Known regulators of flowering time or floral organ development were identified in these categories through literature search and representative mutants for each category were purchased for functional characterization by growth and morphological phenotyping. To this end, a workflow was developed for high throughput phenotypic screening of growth, morphology and flowering of nearly a thousand plants in one experimental round.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5368169PMC
http://dx.doi.org/10.3389/fpls.2017.00416DOI Listing

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