The cityEHR is an example of an open source EHR system which stores clinical data as collections of XML documents. The records gathered in routine clinical care are a rich source of longitudinal data for use in clinical studies. We describe how the standard language XQuery can be used to identify cohorts of patients, matching specified criteria. We discuss methods for ensuring good data quality and the issues in implementing XML queries on longitudinal data sets.
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Sleep Research & Treatment Center, Department of Psychiatry & Behavioral Health, Penn State University, College of Medicine, Hershey PA, USA.
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