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Database of Periodic DNA Regions in Major Genomes. | LitMetric

Database of Periodic DNA Regions in Major Genomes.

Biomed Res Int

Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky Ave. 33, bld. 2, 119071 Moscow, Russia; National Research Nuclear University "MEPhI", Kashirskoe Shosse 31, Moscow 115409, Russia.

Published: February 2017

. We analyzed several prokaryotic and eukaryotic genomes looking for the periodicity sequences availability and employing a new mathematical method. The method envisaged using the random position weight matrices and dynamic programming. Insertions and deletions were allowed inside periodicities, thus adding a novelty to the results we obtained. A periodicity length, one of the key periodicity features, varied from 2 to 50 nt. Totally over 60,000 periodicity sequences were found in 15 genomes including some chromosomes of the (partial), , and genomes.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5274682PMC
http://dx.doi.org/10.1155/2017/7949287DOI Listing

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