Summary: GLINT is a user-friendly command-line toolset for fast analysis of genome-wide DNA methylation data generated using the Illumina human methylation arrays. GLINT, which does not require any programming proficiency, allows an easy execution of Epigenome-Wide Association Study analysis pipeline under different models while accounting for known confounders in methylation data.
Availability And Implementation: GLINT is a command-line software, freely available at https://github.com/cozygene/glint/releases . It requires Python 2.7 and several freely available Python packages. Further information and documentation as well as a quick start tutorial are available at http://glint-epigenetics.readthedocs.io .
Contact: elior.rahmani@gmail.com or ehalperin@cs.ucla.edu.
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| http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870777 | PMC |
| http://dx.doi.org/10.1093/bioinformatics/btx059 | DOI Listing |
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GLINT: a user-friendly toolset for the analysis of high-throughput DNA-methylation array data.
Bioinformatics
June 2017
Computer Science Department, University of California Los Angeles, Los Angeles, CA, USA.
Summary: GLINT is a user-friendly command-line toolset for fast analysis of genome-wide DNA methylation data generated using the Illumina human methylation arrays. GLINT, which does not require any programming proficiency, allows an easy execution of Epigenome-Wide Association Study analysis pipeline under different models while accounting for known confounders in methylation data.
Availability And Implementation: GLINT is a command-line software, freely available at https://github.
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