An expanded nuclear phylogenomic PCR toolkit for Sapindales.

Appl Plant Sci

George Mason University, 4400 University Drive, MSN 3E1, Fairfax, Virginia 22030-4444 USA.

Published: December 2016

Premise Of The Study: We tested PCR amplification of 91 low-copy nuclear gene loci in taxa from Sapindales using primers developed for (Burseraceae).

Methods And Results: Cross-amplification of these markers among 10 taxa tested was related to their phylogenetic distance from . On average, each Sapindalean taxon yielded product for 53 gene regions (range: 16-90). (Brassicales), by contrast, yielded product for two. Single representatives of Anacardiaceae and Rutacaeae yielded 34 and 26 products, respectively. Twenty-six primer pairs worked for all Burseraceae species tested if highly divergent is excluded, and eight of these amplified product in every Sapindalean taxon.

Conclusions: Our study demonstrates that customized primers for can amplify product in a range of Sapindalean taxa. This collection of primer pairs, therefore, is a valuable addition to the toolkit for nuclear phylogenomic analyses of Sapindales and warrants further investigation.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5238699PMC
http://dx.doi.org/10.3732/apps.1600078DOI Listing

Publication Analysis

Top Keywords

nuclear phylogenomic
8
yielded product
8
primer pairs
8
expanded nuclear
4
phylogenomic pcr
4
pcr toolkit
4
toolkit sapindales
4
sapindales premise
4
premise study
4
study tested
4

Similar Publications

In plants, cellular function is orchestrated by three distinct genomes located within the nucleus, mitochondrion, and plastid. These genomes are interdependent, requiring tightly coordinated maintenance and expression. Plastids host several multisubunit protein complexes encoded by both the plastid and nuclear genomes.

View Article and Find Full Text PDF

A recent study proposed a new genetic lineage of leatherback turtles (Dermochelys coriacea) based on genetic analysis, environmental history, and local ecological knowledge (LEK), suggesting the existence of two possible species or subspecies on the beaches of Oaxaca, diverging ~ 13.5 Mya. However, this hypothesis may be influenced by nuclear mitochondrial DNA segments (NUMTs), which could have been misamplified as true mtDNA.

View Article and Find Full Text PDF

We evaluate the evidence of cryptic speciation in Larimus breviceps, a species widely distributed in the western South Atlantic, from the Greater Antilles to Santa Catarina in Brazil. Mitochondrial (COI, Cyt b, and Control Region) and nuclear (IGF1 and Tmo-4C4) sequences were obtained from populations in the western South Atlantic. The analysis revealed two genetically distinct, sympatric lineages with no gene flow, with L.

View Article and Find Full Text PDF

Integrative taxonomy of the genus Pseudoacanthocephalus (Acanthocephala: Echinorhynchida) in China, with the description of two new species and the characterization of the mitochondrial genomes of Pseudoacanthocephalus sichuanensis sp. n. and Pseudoacanthocephalus nguyenthileae.

Parasit Vectors

December 2024

Hebei Collaborative Innovation Center for Eco-Environment, Hebei Key Laboratory of Animal Physiology, Biochemistry and Molecular Biology, College of Life Sciences, Hebei Normal University, Shijiazhuang, 050024, Hebei Province, People's Republic of China.

Background: Acanthocephalans (thorny headed worms) of the genus Pseudoacanthocephalus mainly parasitize amphibians and reptiles across the globe. Some species of the genus Pseudoacanthocephalus also can accidentally infect human and cause human acanthocephaliasis. Current knowledge of the species composition of the genus Pseudoacanthocephalus from amphibians and reptiles in China is incomplete.

View Article and Find Full Text PDF

The Anopheles maculipennis complex consists of several mosquito species, including some primary malaria vectors. Therefore, the presence of a species in a particular area significantly affects public health. In this study, 1252 mosquitoes were collected in northern Italy, representing four identified species of the Anopheles maculipennis complex (Anopheles daciae sp.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!