Unlabelled: The identification of environmental factors that lead to loss of tolerance has been coined the holy grail of autoimmunity. Our work has focused on the reactivity of antimitochondrial autoantibodies (AMA) to chemical xenobiotics and has hypothesized that a modified peptide within PDC-E2, the major mitochondrial autoantigen, will have been immunologically recognized at the time of loss of tolerance. Herein, we successfully applied intein technology to construct a PDC-E2 protein fragment containing amino acid residues 177-314 of PDC-E2 by joining a recombinant peptide spanning residues 177-252 (PDC-228) with a 62-residue synthetic peptide from 253 to 314 (PP), which encompasses PDC-E2 inner lipoyl domain (ILD). We named this intein-constructed fragment PPL. Importantly, PPL, as well as lipoic acid conjugated PPL (LA-PPL) and xenobiotic 2-octynoic acid conjugated PPL (2OA-PPL), are recognized by AMA. Of great importance, AMA has specificity for the 2OA-modified PDC-E2 ILD peptide backbone distinct from antibodies that react with native lipoylated PDC-E2 peptide. Interestingly, this unique AMA subfraction is of the immunoglobulin M isotype and more dominant in early-stage primary biliary cholangitis (PBC), suggesting that exposure to 2OA-PPL-like compounds occurs early in the generation of AMA. To understand the structural basis of this differential recognition, we analyzed PPL, LA-PPL, and 2OA-PPL using electron paramagnetic resonance spectroscopy, with confirmations by enzyme-linked immunosorbent assay, immunoblotting, and affinity antibody analysis. We demonstrate that the conformation of PDC-E2 ILD is altered when conjugated with 2OA, compared to conjugation with lipoic acid.
Conclusion: A molecular understanding of the conformation of xenobiotic-modified PDC-E2 is critical for understanding xenobiotic modification and loss of tolerance in PBC with widespread implications for a role of environmental chemicals in the induction of autoimmunity. (Hepatology 2017;65:1670-1682).
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http://dx.doi.org/10.1002/hep.29059 | DOI Listing |
Cardiol Rev
October 2024
From the School of Medicine, New York Medical College, Valhalla, NY.
The prevalence of individuals with overweight and obesity has increased by 18% since 1990 and it is projected that by 2030, nearly 50% of US adults will have obesity. Lifestyle modifications, such as diet and exercise, typically lead to approximately 3-5% weight loss, whereas 5-15% weight loss is necessary to significantly impact obesity-associated comorbidities and improve overall health outcomes. In addition to lifestyle modifications, pharmacotherapy has been utilized as an adjunctive treatment to increase weight loss and improve health outcomes.
View Article and Find Full Text PDFGenomics Proteomics Bioinformatics
December 2024
Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Clayton, VIC 3800, Australia.
Unlabelled: The accurate identification of catalytic residues contributes to our understanding of enzyme functions in biological processes and pathways. The increasing number of protein sequences necessitates computational tools for the automated prediction of catalytic residues in enzymes. Here, we introduce SCREEN, a graph neural network for the high-throughput prediction of catalytic residues via the integration of enzyme functional and structural information.
View Article and Find Full Text PDFPhysiol Plant
December 2024
Dipartimento di Scienze della Vita, Università di Trieste, Trieste, Italia.
A common assumption of plant hydraulic physiology is that high hydraulic efficiency must come at the cost of hydraulic safety, generating a trade-off that raises doubts about the possibility of selecting both productive and drought-tolerant herbaceous crops. Wetland plants typically display high productivity, which requires high hydraulic efficiency to sustain transpiration rates coupled to CO uptake. Previous studies have suggested high vulnerability to xylem embolism of different wetland plants, in line with expected trade-offs.
View Article and Find Full Text PDFCureus
November 2024
Psychiatry, Rajarajeswari Medical College & Hospital, Bengaluru, IND.
Background Food addiction (FA), where an individual displays a loss of control over the consumption of calorie-dense foods (refined carbohydrates, fats), is proposed to be like substance-use disorders with the experience of cravings, reduced control over intake, increased impulsivity, and altered reward-sensitivity. FA may also be associated with obesity. This study aimed to determine the prevalence of FA in urban and rural areas, and the proportion of obesity in young adults with FA.
View Article and Find Full Text PDFPlant Biol (Stuttg)
December 2024
Laboratory of Entomology, Plant Sciences, Wageningen University and Research, Wageningen, The Netherlands.
Plants can sustain various degrees of damage or compensate for tissue loss by regrowth without significant fitness costs. This tolerance to insect herbivory depends on the plant's developmental stage during which the damage is inflicted and on how much tissue is removed. Plant fitness correlates, that is, biomass and germination of seeds, were determined at different ontogenetic stages, vegetative, budding, or flowering stages of three annual brassicaceous species exposed to feeding by Pieris brassicae caterpillars at different intensities.
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