Cytoplasmic RNA-Protein Particles Exhibit Non-Gaussian Subdiffusive Behavior.

Biophys J

Department of Chemical Engineering, Stanford University, Stanford, California; Department of Applied Physics, Stanford University, Stanford, California; Department of Materials Science, Stanford University, Stanford, California; Biophysics Program, Stanford University, Stanford, California. Electronic address:

Published: February 2017

The cellular cytoplasm is a complex, heterogeneous environment (both spatially and temporally) that exhibits viscoelastic behavior. To further develop our quantitative insight into cellular transport, we analyze data sets of mRNA molecules fluorescently labeled with MS2-GFP tracked in real time in live Escherichia coli and Saccharomyces cerevisiae cells. As shown previously, these RNA-protein particles exhibit subdiffusive behavior that is viscoelastic in its origin. Examining the ensemble of particle displacements reveals a Laplace distribution at all observed timescales rather than the Gaussian distribution predicted by the central limit theorem. This ensemble non-Gaussian behavior is caused by a combination of an exponential distribution in the time-averaged diffusivities and non-Gaussian behavior of individual trajectories. We show that the non-Gaussian behavior is a consequence of significant heterogeneity between trajectories and dynamic heterogeneity along single trajectories. Informed by theory and simulation, our work provides an in-depth analysis of the complex diffusive behavior of RNA-protein particles in live cells.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5300785PMC
http://dx.doi.org/10.1016/j.bpj.2016.11.3208DOI Listing

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