Characterization of masses in computer-aided detection systems for digital breast tomosynthesis (DBT) is an important step to reduce false positive (FP) rates. To effectively differentiate masses from FPs in DBT, discriminative mass feature representation is required. In this paper, we propose a new latent feature representation boosted by depth directional long-term recurrent learning for characterizing malignant masses. The proposed network is designed to encode mass characteristics in two parts. First, 2D spatial image characteristics of DBT slices are encoded as a slice feature representation by convolutional neural network (CNN). Then, depth directional characteristics of masses among the slice feature representations are encoded by the proposed depth directional long-term recurrent learning. In addition, to further improve the class discriminability of latent feature representation, we have devised three objective functions aiming to (a) minimize classification error, (b) minimize intra-class variation within the same class, and (c) preserve feature representation consistency in a central slice. Experimental results have demonstrated that the proposed latent feature representation achieves a higher level of classification performance in terms of receiver operating characteristic (ROC) curves and the area under the ROC curve values compared to performance with feature representation learned by conventional CNN and hand-crafted features.
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http://dx.doi.org/10.1088/1361-6560/aa504e | DOI Listing |
Epigenetics Chromatin
January 2025
Department of Maternal‑Fetal Biology, National Center for Child Health and Development, Tokyo, 157‑8535, Japan.
Background: DNA methylation plays a crucial role in mammalian development. While methylome changes acquired in the parental genomes are believed to be erased by epigenetic reprogramming, accumulating evidence suggests that methylome changes in sperm caused by environmental factors are involved in the disease phenotypes of the offspring. These findings imply that acquired sperm methylome changes are transferred to the embryo after epigenetic reprogramming.
View Article and Find Full Text PDFComput Methods Programs Biomed
January 2025
Guizhou Province International Science and Technology Cooperation Base for Precision Imaging Diagnosis and Treatment, Key Laboratory of Advanced Medical Imaging and Intelligent Computing of Guizhou Province, Department of Radiology, Guizhou Provincial People's Hospital, Guizhou 550002, China. Electronic address:
Background And Objective: Accurate segmentation of the prostate region in magnetic resonance imaging (MRI) is crucial for prostate-related diagnoses. Recent studies have incorporated Transformers into prostate region segmentation to better capture long-range global feature representations. However, due to the computational complexity of Transformers, these studies have been limited to processing single slices.
View Article and Find Full Text PDFSci Rep
January 2025
College of computer science and technology, China University of Petroleum (East China), No.66 Changjiang West Road, Huangdao, Qingdao, 266580, Shandong, China.
Addressing the issues of inadequate information exchange among subsequences in the operational time series of water injection pumps, leading to low accuracy and high false alarm rates in anomaly detection, this paper proposes a multidimensional time series anomaly detection method for water injection pump operations, leveraging Long Short-Term Memory Autoencoder augmented with Attention Mechanism (LSTMA-AE) and mechanistic constraints. The LSTMA-AE framework encompasses three primary modules: a Time Feature Extraction Module (Encoder), an Attention Layer, and a Data Reconstruction Module (Decoder). The Encoder captures temporal dependencies and features within the input sequences, mapping the input data into a higher-dimensional space.
View Article and Find Full Text PDFBrief Bioinform
November 2024
Information Science and Technology College, Dalian Maritime University, No.1 Linghai Road, 116026, Dalian, Liaoning, China.
Identifying biologically significant protein complexes from protein-protein interaction (PPI) networks and understanding their roles are essential for elucidating protein functions, life processes, and disease mechanisms. Current methods typically rely on static PPI networks and model PPI data as pairwise relationships, which presents several limitations. Firstly, static PPI networks do not adequately represent the scopes and temporal dynamics of protein interactions.
View Article and Find Full Text PDFArch Gynecol Obstet
January 2025
Department of Congenital Cardiac Surgery, IRCCS Policlinico San Donato, 20097, San Donato, Milan, Italy.
Objectives: Congenital thoracic masses (CTMs) are suspected in presence of solid or cystic thoracic lesions at ultrasound. The common typical fetal CTMs encompass: hyperechogenic lung lesions such as congenital pulmonary airway malformation (CPAM), broncopulmonary sequestration (PS) and congenital high airway obstruction syndrome (CHAOS); less common solid thoracic masses are mediastinal/pericardial tumors as rhabdomyoma and teratoma. The aim of our study is to gather the available evidence on cases of atypical CTMs of difficult classification, for which the diagnosis remains often uncertain.
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