A wide variety of terrestrial ecosystems in tundra have a ground vegetation cover composed of reindeer lichens (genera and ). The microbial communities of two lichen-dominated ecosystems typical of the sub-arctic zone of northwestern Siberia, that is a forested tundra soil and a shallow acidic peatland, were examined in our study. As revealed by molecular analyses, soil and peat layers just beneath the lichen cover were abundantly colonized by bacteria from the phylum . Highest abundance of planctomycetes detected by fluorescence hybridization was in the range 2.2-2.7 × 10 cells per gram of wet weight. 16S rRNA gene fragments from the comprised 8-13% of total 16S rRNA gene reads retrieved using Illumina pair-end sequencing from the soil and peat samples. Lichen-associated assemblages of planctomycetes displayed unexpectedly high diversity, with a total of 89,662 reads representing 1723 operational taxonomic units determined at 97% sequence identity. The soil of forested tundra was dominated by uncultivated members of the family Planctomycetaceae (53-71% of total -like reads), while sequences affiliated with the -related group WD2101 (recently assigned to the order Tepidisphaerales) were most abundant in peat (28-51% of total reads). Representatives of the - group (14-28% of total reads) and the lineages defined by the genera (1-4%) and (1-3%) were present in both habitats. Two strains of -like bacteria were isolated from studied soil and peat samples. These planctomycetes displayed good tolerance of low temperatures (4-15°C) and were capable of growth on a number of polysaccharides, including lichenan, a characteristic component of lichen-derived phytomass.
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5177623 | PMC |
http://dx.doi.org/10.3389/fmicb.2016.02065 | DOI Listing |
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