The existence of the cluster of duplicated sit silicon transporter genes in the chromosome of the diatom Synedra acus subsp. radians was shown for the first time. Earlier, the localization of sit genes in the same chromosome and cluster formation caused by gene duplication was shown only for the marine raphid pennate diatom P. tricornutum. Only non-clustered sit genes were found in the genomes of other diatoms. It is reasonable to assume that sit tandem (sit-td) and sit triplet (sit-tri) genes of S. acus subsp. radians occurred as a result of gene duplication followed by divergence of gene copies.
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http://dx.doi.org/10.1134/S1607672916060089 | DOI Listing |
PLoS One
February 2019
Genomics Core Facility, Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia.
Silicon transporters (SIT) are the proteins, which capture silicic acid in the aquatic environment and direct it across the plasmalemma to the cytoplasm of diatoms. Diatoms utilize silicic acid to build species-specific ornamented exoskeletons and make a significant contribution to the global silica cycle, estimated at 240 ±40 Tmol a year. Recently SaSIT genes of the freshwater araphid pennate diatom Synedra acus subsp.
View Article and Find Full Text PDFDokl Biochem Biophys
January 2017
Limnological Institute, Siberian Branch, Russian Academy of Sciences, Irkutsk, 664033, Russia.
Cells of the araphid pennate diatom Synedra acus subsp. radians contain large inclusion (1-15 μm) storing silica, as revealed by transmission electron microscopy and EDX-analysis. The size of the inclusions increases with the time of cultivation of diatoms.
View Article and Find Full Text PDFDokl Biochem Biophys
November 2016
Limnological Institute, Siberian Branch, Russian Academy of Sciences, ul. Ulan-Batorskaya 3, Irkutsk, 664033, Russia.
The existence of the cluster of duplicated sit silicon transporter genes in the chromosome of the diatom Synedra acus subsp. radians was shown for the first time. Earlier, the localization of sit genes in the same chromosome and cluster formation caused by gene duplication was shown only for the marine raphid pennate diatom P.
View Article and Find Full Text PDFDiatoms are unicellular microscopic eukaryotes able to form species-specific frustules with micro- and nanostructures of biogenic silica. The morphogenesis of frustules components occurs intracellularly within special organelles under control of cytoskeleton. The mechanisms of morphogenesis control are not clear.
View Article and Find Full Text PDFEnviron Sci Pollut Res Int
January 2017
Limnological Institute, Siberian Branch, Russian Academy of Sciences, 3 Ulan-Batorskaya, 664033, Irkutsk, Russia.
The accumulation of hydrophobic compounds by phytoplankton plays a crucial role in the biogeochemical cycle of persistent organic pollutants (POPs) in aquatic environments. We studied the accumulation of polycyclic aromatic hydrocarbons (PAHs) in the freshwater diatom Synedra acus subsp. radians during its cultivation with crude oil hydrocarbons, using epifluorescent and laser confocal microscopy as well as gas chromatography-mass spectrometry (GC/MS) analysis.
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