Complete genome sequence of the actinomycete type strain HPA 177 isolated from a marine sponge.

Stand Genomic Sci

Technology Platform Genomics, CeBiTec, Bielefeld University, Bielefeld, Germany ; Sinkey Lab, Department of Biology, Massachusetts Institute of Technology, Cambridge, USA.

Published: December 2016

AI Article Synopsis

  • HPA 177 is a Gram-positive actinomycete bacterium that is aerobic, spore-forming, and produces black pigment, isolated from a marine sponge.
  • Actinomycetes are known for their ability to produce valuable secondary metabolites used in drugs for treating infections, tumors, and immune disorders, making them important for drug discovery.
  • The complete genome of HPA 177, which features a 6.31 Mbp chromosome with over 5,300 protein-coding genes, will enhance research efforts to uncover new bioactive compounds from unexplored marine ecosystems.

Article Abstract

HPA 177 is a Gram-positive, strictly aerobic, black pigment producing and spore-forming actinomycete, which forms branching vegetative hyphae and was isolated from the marine sponge . Actinomycete bacteria are prolific producers of secondary metabolites, some of which have been developed into anti-microbial, anti-tumor and immunosuppressive drugs currently used in human therapy. Considering this and the growing interest in natural products as sources of new drugs, actinomycete bacteria from the hitherto poorly explored marine environments may represent promising sources for drug discovery. As , isolated from the marine sponge, is a type strain of the recently described and rare genus , knowledge of the complete genome sequence enables genome analyses to identify genetic loci for novel bioactive compounds. This project, describing the 6.31 Mbp long chromosome, with its 5346 protein-coding and 73 RNA genes, will aid the project.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5168871PMC
http://dx.doi.org/10.1186/s40793-016-0213-3DOI Listing

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