Efficient Implementation of Energy Decomposition Analysis for Second-Order Møller-Plesset Perturbation Theory and Application to Anion-π Interactions.

J Phys Chem A

Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley , Berkeley, California 94720, United States.

Published: January 2017

Energy decomposition analysis (EDA) is a widely used tool for extracting physical and chemical insights from electronic structure calculations of intermolecular interactions, as well as for the development of advanced force fields for describing those interactions. Recently, the absolutely localized molecular orbital (ALMO) EDA has been extended from the self-consistent field level to the second-order Møller-Plesset (MP2) theory level. This paper reports an efficient implementation of the MP2 ALMO-EDA that scales optimally, employs the resolution of the identity (RI) approximation for post-SCF matrix elements, and is shared-memory parallel. The algorithms necessary to achieve this implementation are described in detail. Performance tests using the aug-cc-pVTZ basis set for water clusters of up to 10 molecules are reported. The timings suggest that the MP2 ALMO-EDA is computationally feasible whenever MP2 energy calculations themselves are feasible, and the cost is dominated by the SCF itself in this size regime. The MP2 ALMO-EDA is applied to study the origin of substituent effects in anion-π interactions between chloride and benzene and mono- through hexafluorobenzene. The effect of fluoro substituents was primarily to change the frozen interaction. Detailed analysis supports the interpretation that anion-π interactions are favorable because of electrostatic interaction with the substituents.

Download full-text PDF

Source
http://dx.doi.org/10.1021/acs.jpca.6b11516DOI Listing

Publication Analysis

Top Keywords

anion-π interactions
12
mp2 almo-eda
12
efficient implementation
8
energy decomposition
8
decomposition analysis
8
second-order møller-plesset
8
interactions
5
mp2
5
implementation energy
4
analysis second-order
4

Similar Publications

Digging deeper into necrotizing enterocolitis: bridging clinical, microbial, and molecular perspectives.

Gut Microbes

December 2025

Department of Pediatrics, Key Laboratory of Birth Defects and Related Diseases of Women and Children (Ministry of Education), West China Second University Hospital, Sichuan University, Chengdu, China.

Necrotizing Enterocolitis (NEC) is a severe, life-threatening inflammatory condition of the gastrointestinal tract, especially affecting preterm infants. This review consolidates evidence from various biomedical disciplines to elucidate the complex pathogenesis of NEC, integrating insights from clinical, microbial, and molecular perspectives. It emphasizes the modulation of NEC-associated inflammatory pathways by probiotics and novel biologics, highlighting their therapeutic potential.

View Article and Find Full Text PDF

Study Objectives: Cancer-related fatigue is one of the most common symptoms in cancer survivors. Cognitive behavioural therapy for insomnia (CBT-I) can improve fatigue, but mechanisms are unclear. This secondary analysis of a randomized controlled trial evaluated whether CBT-I led to a significant improvement in fatigue, accounting for change in comorbid symptoms of insomnia, perceived cognitive impairment (PCI), anxiety, and depression.

View Article and Find Full Text PDF

Introduction: Prior research shows that in-person exposure to electronic nicotine delivery systems (ENDS) use increases desire for cigarettes and ENDS. However, less is known about the impact of cues delivered during remote interactions. This study extends previous in-person cue work by leveraging a remote confederate-delivered cue-delivery paradigm to evaluate the impact of dual nicotine vaping (vs.

View Article and Find Full Text PDF

TRPV4 as a Novel Regulator of Ferroptosis in Colon Adenocarcinoma: Implications for Prognosis and Therapeutic Targeting.

Dig Dis Sci

January 2025

Ningxia Medical University, Xing Qing Block, Shengli Street No.1160, Yin Chuan City, 750004, Ningxia Province, People's Republic of China.

Background: Colon adenocarcinoma (COAD) is a leading cause of cancer-related mortality worldwide. Transient receptor potential vanilloid 4 (TRPV4), a calcium-permeable non-selective cation channel, has been implicated in various cancers, including COAD. This study investigates the role of TRPV4 in colon adenocarcinoma and elucidates its potential mechanism via the ferroptosis pathway.

View Article and Find Full Text PDF

Linking Long ncRNA to the Diagnosis, Pathogenesis, and Prognosis of Esophageal Cancer.

Dig Dis Sci

January 2025

Department of Gastroenterology and Hepatology, Loyola University Medical Center, 2160 S First Ave, Maywood, IL, 60153, USA.

Esophageal cancer is a common and often deadly malignancy, with treatment success depending largely on the stage at the time of diagnosis. Recently, studies have examined the role of non-coding RNAs in esophageal cancer pathogenesis, prognosis and therapy. This perspective specifically examines interactions long non-coding RNAs have with other RNA molecules in various facets of esophageal cancer.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!