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Experimental and Theoretical Investigations of Infrared Multiple Photon Dissociation Spectra of Asparagine Complexes with Zn and Cd and Their Deamidation Processes. | LitMetric

AI Article Synopsis

  • The study investigates asparagine (Asn) complexes cationized with zinc (Zn) and cadmium (Cd), using infrared multiple photon dissociation spectroscopy to analyze their structures.
  • Both complexes were generated via electrospray ionization, leading to [Zn(Asn-H)] and CdCl(Asn), with quantum chemical calculations identifying their low-energy conformers.
  • The binding motifs for these complexes were characterized, revealing that Zn prefers to bind at the carboxylate site while Cd forms a tridentate structure, and dissociation pathways were established for both complexes.

Article Abstract

Complexes of asparagine (Asn) cationized with Zn and Cd were examined by infrared multiple photon dissociation (IRMPD) action spectroscopy using light generated from a free electron laser. Electrospray ionization yielded complexes of deprotonated Asn with Zn, [Zn(Asn-H)], and intact Asn with CdCl, CdCl(Asn). Series of low energy conformers for each complex were found using quantum chemical calculations in order to identify the structures formed experimentally. The experimentally obtained spectra were compared to those calculated from optimized structures at the B3LYP/6-311+G(d,p) level for [Zn(Asn-H)] and the B3LYP/def2-TZVP level with an SDD effective core potential on cadmium for the CdCl(Asn) system. The main binding motif observed for the CdCl complex is a charge solvated, tridentate [N, CO, CO] structure where the metal binds to the backbone amino group and carbonyl oxygens of the carboxylic acid and side-chain amide groups. The Zn system deprotonates at the backbone carboxylic acid and prefers a [N, CO, CO] binding motif, where binding was observed at the carboxylate site along with the backbone amino group and side-chain carbonyl groups. In both cases, the theoretically determined lowest-energy conformers explain the experimental [Zn(Asn-H)] and CdCl(Asn) spectra well. Additionally, complete mechanistic pathways were found for each of the major dissociation reactions of [Zn(Asn-H)] (primary loss of CO, followed by the sequential loss of NH) and CdCl(Asn) (concomitant loss of NH + CO).

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Source
http://dx.doi.org/10.1021/acs.jpcb.6b10326DOI Listing

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