Comparative detection of a large population of grapevine viruses by TaqMan RT-qPCR and ELISA.

J Virol Methods

Université de Haute-Alsace, Laboratoire Vigne Biotechnologies & Environnement, 33 rue de Herrlisheim, 68100, Colmar, France. Electronic address:

Published: February 2017

Grapevine (Vitis spp.) can be infected by numerous viruses that are often widespread and of great economic importance. Reliable detection methods are necessary for sanitary selection which is the only way to partly control grapevine virus diseases. Biological indexing and ELISA are currently the standard methods for screening propagation material, and PCR-methods are becoming increasingly popular. Due to the diversity of virus isolates, it is essential to verify that the tests allow the detection of the largest possible virus populations. We developed three quadruplex TaqMan RT-qPCR assays for detecting nine different viruses that cause considerable damage in many vineyards world-wide. Each assay is designed to detect three viruses and the grapevine Actin as an internal control. A large population of grapevines from diverse cultivars and geographic location was tested for the presence of nine viruses: Arabis mosaic virus (ArMV), Grapevine fleck virus (GFkV), Grapevine fanleaf virus (GFLV), Grapevine leafroll-associated viruses (GLRaV-1, -2, -3), Grapevine rupestris stem pitting-associated virus (GRSPaV), Grapevine virus A (GVA), and Grapevine virus B (GVB). In general, identical results were obtained with multiplex TaqMan RT-qPCR and ELISA although, in some cases, viruses could be detected by only one of the two techniques.

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jviromet.2016.12.003DOI Listing

Publication Analysis

Top Keywords

taqman rt-qpcr
12
grapevine virus
12
grapevine
10
virus
9
large population
8
rt-qpcr elisa
8
viruses
7
comparative detection
4
detection large
4
population grapevine
4

Similar Publications

This study aimed to investigate the dissemination of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in water samples obtained during the coronavirus disease 2019 pandemic period, employing cross-assembly phage (crAssphage) as a fecal contamination biomarker and next-generation sequencing protocols to characterize SARS-CoV-2 variants. Raw wastewater and surface water (stream and sea) samples were collected for over a month in Rio de Janeiro, Brazil. Ultracentrifugation and negatively charged membrane filtration were employed for viral concentration of the wastewater and surface water samples, respectively.

View Article and Find Full Text PDF

Changes in miRNA Pattern Expression Associated With COVID-19 Severity.

In Vivo

December 2024

Laboratorio de Biología Molecular, Laboratorio Estatal de Salud Pública del Estado de México, Toluca de Lerdo, Mexico

Background/aim: Coronavirus disease 2019 (COVID-19), caused by SARS-CoV-2 infection, manifests a wide range of clinical symptoms ranging from mild to moderate and severe. Host-related factors influence the course of SARS-CoV-2 infection; for instance, the expression of host microRNAs (miRNAs) could influence the progression and complications of COVID-19. This study aimed to determine the expression pattern of endogenous miRNAs in 80 severe COVID-19 patients compared to a group of healthy individuals.

View Article and Find Full Text PDF

Identification and Analysis of Small Nucleolar RNAs by Real-Time Quantitative PCR.

Methods Mol Biol

December 2024

Aging + Cardiovascular Discovery Center, Department of Cardiovascular Sciences, Lewis Katz School of Medicine, Temple University, Philadelphia, PA, USA.

Article Synopsis
  • The Human Genome Project revealed that only about 2% of the human genome codes for proteins, labeling the rest as noncoding or "junk" DNA.
  • Over the past two decades, research has shown that noncoding RNAs play crucial roles in regulating cell and tissue functions, classified into long noncoding RNAs and small noncoding RNAs.
  • Small nucleolar RNAs (snoRNAs), a type of small noncoding RNA, are vital for modifying other RNAs and are analyzed using techniques like real-time quantitative PCR (RT-qPCR).
View Article and Find Full Text PDF

Background: The role of the vitamin D receptor single nucleotide polymorphism FOKI (VDR-FOKI) (rs2228570) in genetic susceptibility to type 2 diabetic kidney disease (T2DKD) remains uncertain. This study investigated the relationship between VDR-FOKI and T2DKD within the Chinese Plateau Han population and analyzed the underlying mechanisms.

Methods: A total of 316 subjects were enrolled, including 44 healthy adults, 114 individuals with type 2 diabetes mellitus (T2DM), and 158 patients with T2DKD.

View Article and Find Full Text PDF

Porcine reproductive and respiratory syndrome virus (PRRSV) is the pathogen that causes porcine reproductive and respiratory syndrome (PRRS), leading to abortion of sows and the manifestation of respiratory diseases in piglets. PRRSV strains are categorized into two distinct genotypes: PRRSV-1 and PRRSV-2. PRRSV-2 can be further classified into several lineages, including sub-lineage 1.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!