We consider the general problem of sensitive and specific discrimination between biochemical species. An important instance is immune discrimination between self and not-self, where it is also observed experimentally that ligands just below the discrimination threshold negatively impact response, a phenomenon called antagonism. We characterize mathematically the generic properties of such discrimination, first relating it to biochemical adaptation. Then, based on basic biochemical rules, we establish that, surprisingly, antagonism is a generic consequence of any strictly specific discrimination made independently from ligand concentration. Thus antagonism constitutes a 'phenotypic spandrel': a phenotype existing as a necessary by-product of another phenotype. We exhibit a simple analytic model of discrimination displaying antagonism, where antagonism strength is linear in distance from the detection threshold. This contrasts with traditional proofreading based models where antagonism vanishes far from threshold and thus displays an inverted hierarchy of antagonism compared to simpler models. The phenotypic spandrel studied here is expected to structure many decision pathways such as immune detection mediated by TCRs and FCϵRIs, as well as endocrine signalling/disruption.
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http://dx.doi.org/10.1088/1478-3975/13/6/066011 | DOI Listing |
Life (Basel)
September 2024
Laboratory of Bacterial Communication and Anti-Infection Strategies, EA 4312, University of Rouen, 76000 Rouen, France.
Ageing Res Rev
November 2024
Institute of Healthy Ageing, and Research Department of Genetics, Evolution and Environment, University College London, London WC1E 6BT, United Kingdom.
Maximum lifespan differs greatly between species, indicating that the process of senescence is largely genetically determined. Senescence evolves in part due to antagonistic pleiotropy (AP), where selection favors gene variants that increase fitness earlier in life but promote pathology later. Identifying the biological mechanisms by which AP causes senescence is key to understanding the endogenous causes of aging and its attendant diseases.
View Article and Find Full Text PDFLife (Basel)
August 2024
Department of Biology, University of Naples Federico II, 80126 Naples, Italy.
Domesticated animals are artificially selected to exhibit desirable traits, however not all traits of domesticated animals are the result of deliberate selection. Loss of olfactory capacity in the domesticated pig () is one example. We used whole transcriptome analysis (RNA-Seq) to compare patterns of gene expression in the olfactory mucosa of the pig and two subspecies of wild boar (), and investigate candidate genes that could be responsible for the loss of olfactory capacity.
View Article and Find Full Text PDFJ Exp Biol
May 2023
Institut für Vogelforschung 'Vogelwarte Helgoland', An Der Vogelwarte 21, 26386 Wilhelmshaven, Germany.
Given that all interactions between an animal and its environment are mediated by movement, questions of how animals inherit, refine and execute trajectories through space are fundamental to our understanding of biology. As with any behavioural trait, navigation can be thought of on many conceptual levels - from the mechanistic to the functional, and from the static to the dynamic - as laid out by Niko Tinbergen in his four questions of animal behaviour. Here, we use a navigation-centric interpretation of Tinbergen's questions to summarise and critique advances in the field of animal navigation.
View Article and Find Full Text PDFHist Philos Life Sci
October 2022
Stetson University, Unit 8250, 104-C Elizabeth Hall, 421 North Woodland Boulevard, DeLand, Florida, 32723, USA.
Against the neo-Darwinian assumption that genetic factors are the principal source of variation upon which natural selection operates, a phenotype-first hypothesis strikes us as revolutionary because development would seem to constitute an independent source of variability. Richard Watson and his co-authors have argued that developmental memory constitutes one such variety of phenotypic variability. While this version of the phenotype-first hypothesis is especially well-suited for the late metazoan context, where animals have a sufficient history of selection from which to draw, appeals to developmental memory seem less plausible in the evolutionary context of the early metazoans.
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