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Advanced CRISPR-Cas9 based technologies first validated in mammalian cell systems are quickly being adapted for use in plants. These new technologies increase CRISPR-Cas9's utility and effectiveness by diversifying cellular capabilities through expression construct system evolution and enzyme orthogonality, as well as enhanced efficiency through delivery and expression mechanisms. Here, we review the current state of advanced CRISPR-Cas9 and Cpf1 capabilities in plants and cover the rapid evolution of these tools from first generation inducers of double strand breaks for basic genetic manipulations to second and third generation multiplexed systems with myriad functionalities, capabilities, and specialized applications. We offer perspective on how to utilize these tools for currently untested research endeavors and analyze strengths and weaknesses of novel CRISPR systems in plants. Advanced CRISPR functionalities and delivery options demonstrated in plants are primarily reviewed but new technologies just coming to the forefront of CRISPR development, or those on the horizon, are briefly discussed. Topics covered are focused on the expansion of expression and delivery capabilities for CRISPR-Cas9 components and broadening targeting range through orthogonal Cas9 and Cpf1 proteins.
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5107562 | PMC |
http://dx.doi.org/10.3389/fpls.2016.01683 | DOI Listing |
Plant Commun
December 2024
Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China; Yazhouwan National Laboratory, Sanya, 572024, China; Academician workstation, National Nanfan Research Institute (Sanya), Chinese Academy of Agricultural Sciences, Sanya, 572024, China. Electronic address:
By integrating genomes of different accessions, the pangenome can offer more comprehensive and reference-bias-free population genetic information in a species than a single reference genome. With the rapid accumulation of genomic sequencing data and the expanding scope of plant research, the focus of plant pangenomics research has gradually evolved from a single species to multiple species in recent years, giving rise to the concept of super pangenome that cover all genomic sequences of a genus-level taxonomic groups. By integrating more cultivated and wild species, the super pangenome has made significant contributions to the resolution of multiple research areas such as plant genetic diversity, evolution, domestication, and molecular breeding.
View Article and Find Full Text PDFBMC Genom Data
December 2024
Institute of Agrobiology, Vietnam National University of Agriculture, Hanoi, Vietnam.
Objectives: This study aims to generate a de novo complete whole-genome assembly of Pseudomonas sp. strain HOU2, which is an endophytic bacterium isolated from dangshen roots that shows to improve the growth of in vitro dangshen plants. Further investigation of the whole genome of Pseudomonas sp.
View Article and Find Full Text PDFACS Nano
December 2024
State Key Laboratory of Material Processing and Die & Mould Technology, School of Materials Science and Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China.
Surface engineering is sought to stabilize nickel-rich layered oxide cathodes in high-energy-density lithium-ion batteries, which suffer from severe surface oxygen loss and rapid structure degradation, especially during deep delithiation at high voltages or high temperatures. Here, we propose a well-designed oxygen-constraining strategy to address the crisis of oxygen evolution. By integrating a La, Fe gradient diffusion layer and a LaFeO coating into the Ni-rich layered particles, along with incorporating an antioxidant binder into the electrodes, three progressive lines of defense are constructed: immobilizing the lattice oxygen at the subsurface, blocking the released oxygen at the interface, and capturing the residual singlet oxygen on the external surface.
View Article and Find Full Text PDFBrain Res
December 2024
Department of Radiology, Zhongnan Hospital of Wuhan University, Wuhan 430071, China. Electronic address:
The corpus callosum (CC) is the largest white matter fiber bundle connecting the two hemispheres, facilitating interhemispheric integration and hemispheric specialization. Neuroimaging studies have identified the CC as a marker for aging and various neuropsychiatric disorders. However, high-resolution imaging and detailed lifespan characterizations of CC morphology and connectivity remain limited.
View Article and Find Full Text PDFACS Synth Biol
December 2024
Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California91125, United States.
Sequence-function data provides valuable information about the protein functional landscape but is rarely obtained during directed evolution campaigns. Here, we present Long-read every variant Sequencing (LevSeq), a pipeline that combines a dual barcoding strategy with nanopore sequencing to rapidly generate sequence-function data for entire protein-coding genes. LevSeq integrates into existing protein engineering workflows and comes with open-source software for data analysis and visualization.
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