We report the presence of mitochondrial DNA (mtDNA) hyperdiversity in the marine periwinkle (Linnaeus, 1758), the first such case among marine gastropods. Our dataset consisted of concatenated 16S-COI-Cyt gene fragments. We used Bayesian analyses to investigate three putative causes underlying genetic variation, and estimated the mtDNA mutation rate, possible signatures of selection and the effective population size of the species in the Azores archipelago. The mtDNA hyperdiversity in is characterized by extremely high haplotype diversity ( = 0.999 ± 0.001), high nucleotide diversity ( = 0.013 ± 0.001), and neutral nucleotide diversity above the threshold of 5% ( = 0.0677). Haplotype richness is very high even at spatial scales as small as 100. Yet, mtDNA hyperdiversity does not affect the ability of DNA barcoding to identify . The mtDNA hyperdiversity in is best explained by the remarkably high mutation rate at the COI locus ( = 5.82 × 10 per site per year or = 1.99 × 10 mutations per nucleotide site per generation), whereas the effective population size of this planktonic-dispersing species is surprisingly small ( = 5, 256; CI = 1,312-3,7495) probably due to the putative influence of selection. Comparison with COI nucleotide diversity values in other organisms suggests that mtDNA hyperdiversity may be more frequently linked to high values and that mtDNA hyperdiversity may be more common across other phyla than currently appreciated.
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http://dx.doi.org/10.7717/peerj.2549 | DOI Listing |
Cladistics
April 2023
Aquatic Ecosystem Research, Faculty of Biology, University of Duisburg-Essen, Universitätsstr. 5, Essen, 45141, Germany.
DNA sequence information has revealed many morphologically cryptic species worldwide. For animals, DNA-based assessments of species diversity usually rely on the mitochondrial cytochrome c oxidase subunit I (COI) gene. However, a growing amount of evidence indicate that mitochondrial markers alone can lead to misleading species diversity estimates due to mito-nuclear discordance.
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January 2023
California Academy of Sciences, San Francisco, CA, USA.
Background: The Malagasy Region, one of the top megadiversity regions, hosts one of the highest numbers of endemic and threatened organisms on earth. One of the most spectacular examples of ant radiation on the island has occurred in the hyperdiverse genus . To this date, there are 135 described Madagascan divided into 16 species-groups, and 97% of Malagasy species are endemic to the island.
View Article and Find Full Text PDFMitochondrial DNA B Resour
March 2022
Key Laboratory of Southwest China Wildlife Resources Conservation (Ministry of Education), China West Normal University, Nanchong, China.
(Smith, 1874) belongs to a famously hyperdiverse and ecologically dominant ant genus. The mitochondrial genome of is 15,579 bp in length, and the overall base composition is 78.6% AT.
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December 2021
Laboratory of Biodiversity and Molecular Evolution, Czech Advanced Technology Research Institute, Centre of Region Hana, Olomouc, Czech Republic.
Conservation efforts must be evidence-based, so rapid and economically feasible methods should be used to quantify diversity and distribution patterns. We have attempted to overcome current impediments to the gathering of biodiversity data by using integrative phylogenomic and three mtDNA fragment analyses. As a model, we sequenced the Metriorrhynchini beetle fauna, sampled from ~700 localities in three continents.
View Article and Find Full Text PDFSyst Biol
February 2022
Institut de Biologia Evolutiva (CSIC-UPF), Passeig Marítim de la Barceloneta, 08003 Barcelona, Catalonia, Spain.
Taxa are frequently labeled incertae sedis when their placement is debated at ranks above the species level, such as their subgeneric, generic, or subtribal placement. This is a pervasive problem in groups with complex systematics due to difficulties in identifying suitable synapomorphies. In this study, we propose combining DNA barcodes with a multilocus backbone phylogeny in order to assign taxa to genus or other higher-level categories.
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