We propose an efficient Monte Carlo method for the computation of the volumes of high-dimensional bodies with arbitrary shape. We start with a region of known volume within the interior of the manifold and then use the multistate Bennett acceptance-ratio method to compute the dimensionless free-energy difference between a series of equilibrium simulations performed within this object. The method produces results that are in excellent agreement with thermodynamic integration, as well as a direct estimate of the associated statistical uncertainties. The histogram method also allows us to directly obtain an estimate of the interior radial probability density profile, thus yielding useful insight into the structural properties of such a high-dimensional body. We illustrate the method by analyzing the effect of structural disorder on the basins of attraction of mechanically stable packings of soft repulsive spheres.
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http://dx.doi.org/10.1103/PhysRevE.94.031301 | DOI Listing |
Environ Pollut
January 2025
School of Ecology and Environment, Anhui Normal University, Wuhu Anhui Province 241002, China; Collaborative Innovation Center of Recovery and Reconstruction of Degraded Ecosystem in Wanjiang Basin Co-Founded by Anhui Province and Ministry of Education, Wuhu 241000, Anhui, China. Electronic address:
Tire wear particles (TWP) are one of the main sources of microplastic (MP) pollution in the marine environment, causing adverse effects on marine life and attracting increasing attention. This study aimed to investigate the chemical composition of TWP (particles and leachate) and their toxic effects on Brachionus plicatilis. The results showed that Zn and acenaphthene were the most frequently detected compounds in the three TWP treatments.
View Article and Find Full Text PDFChaos
January 2025
IGCE-Physics Department, São Paulo State University (UNESP), 13506-900 Rio Claro, SP, Brazil.
The dynamics of the convergence for the stationary state considering a Duffing-like equation are investigated. The driven potential for these dynamics is supplied by a damped forced oscillator that has a piecewise linear function. Fixed points and their basins of attraction were identified and measured.
View Article and Find Full Text PDFNat Commun
December 2024
Department of Evolutionary Biology and Environmental Studies, University of Zurich, Winterthurerstrasse 190, Zurich, CH-8057, Switzerland.
Transcription factor binding sites (TFBSs) are important sources of evolutionary innovations. Understanding how evolution navigates the sequence space of such sites can be achieved by mapping TFBS adaptive landscapes. In such a landscape, an individual location corresponds to a TFBS bound by a transcription factor.
View Article and Find Full Text PDFCogn Neurodyn
December 2024
Center for Research, SRM Institute of Science and Technology, Ramapuram, Chennai, 600089 India.
This study delves into the examination of a network of adaptive synapse neurons characterized by a small-world network topology connected through electromagnetic flux and infused with randomness. First, this research extensively explores the existence of the global multi-stability of a single adaptive synapse-based neuron model with magnetic flux. The non-autonomous neuron model exhibits periodically switchable equilibrium states that are strongly related to the transitions between stable and unstable points in every whole periodic cycle, leading to the creation of global multi-stability.
View Article and Find Full Text PDFChemosphere
December 2024
Shanxi Key Laboratory of Sorghum Genetic and Germplasm Innovation, Sorghum Research Institute, Shanxi Agricultural University, Jinzhong, 030600, China.
Antibiotics in surface water have attracted increasing attention because of their potential threats to aquatic ecosystems and public health. Therefore, it is crucial to develop a priority antibiotic list and establish a regulatory framework for antibiotic control. Taking the Fenhe River Basin in North China as the study area, a method to rank priority antibiotics based on their environmental exposure, ecological effects, and human health risks was established.
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